Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009603/0.0009603, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001028/0.001028, allocations: 173 kB / 23.49 MB, free: 1.059 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9323/0.9323, allocations: 177.1 MB / 203.8 MB, free: 5.633 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.522/1.522, allocations: 273.5 MB / 0.5213 GB, free: 14.79 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.092e-06/1.092e-06, allocations: 1.312 kB / 0.647 GB, free: 38.7 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.4e-05/1.509e-05, allocations: 3.531 kB / 0.647 GB, free: 38.7 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.004358/0.004374, allocations: 6.699 MB / 0.6535 GB, free: 34.41 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001885/0.006259, allocations: 2.008 MB / 0.6555 GB, free: 33.04 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002586/0.006517, allocations: 18.72 kB / 0.6555 GB, free: 33.04 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0004881/0.007006, allocations: 289.1 kB / 0.6558 GB, free: 32.89 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004246/0.00743, allocations: 475.7 kB / 0.6562 GB, free: 32.56 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.000595/0.008025, allocations: 0.5307 MB / 0.6568 GB, free: 32.23 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001129/0.009154, allocations: 1.798 MB / 0.6585 GB, free: 31.22 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003054/0.00946, allocations: 258.1 kB / 0.6588 GB, free: 31.07 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005845/0.01004, allocations: 0.9093 MB / 0.6596 GB, free: 30.64 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004175/0.01046, allocations: 0.5371 MB / 0.6602 GB, free: 30.43 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001414/0.0106, allocations: 171 kB / 0.6603 GB, free: 30.43 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002896/0.01089, allocations: 313.6 kB / 0.6606 GB, free: 30.38 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001713/0.01106, allocations: 368.8 kB / 0.661 GB, free: 30.14 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003447/0.01141, allocations: 0.5191 MB / 0.6615 GB, free: 29.89 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0008774/0.01229, allocations: 1.385 MB / 0.6628 GB, free: 29.14 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.136e-06/0.01229, allocations: 0 / 0.6628 GB, free: 29.14 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.81e-07/0.01229, allocations: 0 / 0.6628 GB, free: 29.14 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.179e-05/0.0123, allocations: 0 / 0.6628 GB, free: 29.14 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.001636/0.01394, allocations: 2.326 MB / 0.6651 GB, free: 27.3 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.062e-05/0.01397, allocations: 9.812 kB / 0.6651 GB, free: 27.3 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006594/0.01463, allocations: 0.5166 MB / 0.6656 GB, free: 27.09 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005611/0.01519, allocations: 0.6929 MB / 0.6663 GB, free: 26.58 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.999e-05/0.01523, allocations: 76.66 kB / 0.6664 GB, free: 26.55 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001086/0.01534, allocations: 115.1 kB / 0.6665 GB, free: 26.51 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001046/0.01638, allocations: 1.312 MB / 0.6678 GB, free: 25.67 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.267e-05/0.01642, allocations: 12.08 kB / 0.6678 GB, free: 25.66 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.818e-05/0.01647, allocations: 40.78 kB / 0.6678 GB, free: 25.64 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.614e-05/0.01649, allocations: 22.38 kB / 0.6678 GB, free: 25.64 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007484/0.01724, allocations: 0.9615 MB / 0.6688 GB, free: 25.03 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002074/0.01931, allocations: 2.64 MB / 0.6714 GB, free: 23.33 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0009898/0.0203, allocations: 1.181 MB / 0.6725 GB, free: 22.48 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000466/0.02077, allocations: 0.7838 MB / 0.6733 GB, free: 21.83 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 4.476e-05/0.02081, allocations: 22.17 kB / 0.6733 GB, free: 21.83 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000921/0.02173, allocations: 1.659 MB / 0.6749 GB, free: 20.52 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 2.475e-06/0.02174, allocations: 0 / 0.6749 GB, free: 20.52 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.004615/0.02635, allocations: 6.477 MB / 0.6812 GB, free: 15.79 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001836/0.02654, allocations: 1.035 MB / 0.6823 GB, free: 14.57 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008384/0.02737, allocations: 0.9275 MB / 0.6832 GB, free: 14.14 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 7.255e-05/0.02745, allocations: 75.88 kB / 0.6832 GB, free: 14.08 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002713/0.02772, allocations: 0.5683 MB / 0.6838 GB, free: 13.63 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002456/0.02796, allocations: 0.5327 MB / 0.6843 GB, free: 13.2 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002829/0.02825, allocations: 284 kB / 0.6846 GB, free: 13.07 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.303e-05/0.02828, allocations: 477.6 kB / 0.685 GB, free: 12.6 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005959/0.02888, allocations: 0.9341 MB / 0.6859 GB, free: 11.84 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007847/0.02966, allocations: 1.423 MB / 0.6873 GB, free: 10.43 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001824/0.03148, allocations: 3.004 MB / 0.6903 GB, free: 7.719 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.484e-06/0.03149, allocations: 2.75 kB / 0.6903 GB, free: 7.719 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.002256/0.03375, allocations: 2.758 MB / 0.693 GB, free: 5.871 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001184/0.03387, allocations: 0.5655 MB / 0.6935 GB, free: 5.227 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.372e-05/0.03388, allocations: 9.781 kB / 0.6935 GB, free: 5.227 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.656e-05/0.03391, allocations: 19.56 kB / 0.6935 GB, free: 5.227 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007013/0.03461, allocations: 343.1 kB / 0.6939 GB, free: 5.188 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.293e-05/0.03463, allocations: 24.05 kB / 0.6939 GB, free: 5.184 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004381/0.03507, allocations: 80.14 kB / 0.694 GB, free: 5.156 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002271/0.0353, allocations: 246.7 kB / 0.6942 GB, free: 5.137 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005773/0.03587, allocations: 0.9334 MB / 0.6951 GB, free: 4.293 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004351/0.03631, allocations: 450.2 kB / 0.6955 GB, free: 4.121 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001313/0.03644, allocations: 132.9 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.036e-05/0.03645, allocations: 13.31 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.903e-05/0.03647, allocations: 2.188 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.206e-05/0.03648, allocations: 7.828 kB / 0.6957 GB, free: 4.035 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002838/0.03932, allocations: 3.978 MB / 0.6996 GB, free: 0.5703 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.218e-06/0.03932, allocations: 4 kB / 0.6996 GB, free: 0.5664 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005461/0.03987, allocations: 227.7 kB / 0.6998 GB, free: 352 kB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 4.628e-06/0.03987, allocations: 8 kB / 0.6998 GB, free: 344 kB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.651e-05/0.03994, allocations: 63.95 kB / 0.6999 GB, free: 280 kB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.037e-06/0.03994, allocations: 4 kB / 0.6999 GB, free: 276 kB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.064e-06/0.03995, allocations: 4 kB / 0.6999 GB, free: 272 kB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00284/0.04279, allocations: 4.023 MB / 0.7038 GB, free: 11.93 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003799/0.04317, allocations: 322.9 kB / 0.7041 GB, free: 11.61 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001489/0.04332, allocations: 68 kB / 0.7042 GB, free: 11.54 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003634/0.04368, allocations: 63.95 kB / 0.7042 GB, free: 11.48 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001997/0.04388, allocations: 151.7 kB / 0.7044 GB, free: 11.33 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001678/0.04405, allocations: 233.4 kB / 0.7046 GB, free: 11.11 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0004512/0.0445, allocations: 0.5439 MB / 0.7051 GB, free: 10.55 MB / 0.5418 GB Notification: Performance of sort global known variables: time 8e-08/0.0445, allocations: 0 / 0.7051 GB, free: 10.55 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.0007261/0.04522, allocations: 384 kB / 0.7055 GB, free: 10.18 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003161/0.04554, allocations: 279 kB / 0.7058 GB, free: 9.902 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.001832/0.04737, allocations: 3.157 MB / 0.7089 GB, free: 6.285 MB / 0.5418 GB Notification: Performance of simCode: created event and clocks part: time 1.703e-06/0.04737, allocations: 0 / 0.7089 GB, free: 6.285 MB / 0.5418 GB Notification: Performance of simCode: created simulation system equations: time 0.001024/0.0484, allocations: 1.897 MB / 0.7107 GB, free: 4.09 MB / 0.5418 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001046/0.04944, allocations: 401.2 kB / 0.7111 GB, free: 3.734 MB / 0.5418 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.00405/0.05349, allocations: 3.914 MB / 0.7149 GB, free: 15.76 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002121/0.05371, allocations: 310.5 kB / 0.7152 GB, free: 15.43 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0002871/0.05399, allocations: 115.1 kB / 0.7153 GB, free: 15.32 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001531/0.05415, allocations: 96.48 kB / 0.7154 GB, free: 15.22 MB / 0.5574 GB Notification: Performance of SimCode: time 9.22e-07/0.05415, allocations: 0 / 0.7154 GB, free: 15.22 MB / 0.5574 GB Notification: Performance of Templates: time 0.02251/0.07666, allocations: 22.91 MB / 0.7378 GB, free: 9.453 MB / 0.573 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.542113942792639]