Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009439/0.0009439, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009209/0.0009209, allocations: 177 kB / 23.5 MB, free: 1.055 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8802/0.8802, allocations: 177.1 MB / 203.8 MB, free: 5.648 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.586/1.586, allocations: 273.5 MB / 0.5213 GB, free: 14.77 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.843e-06/1.843e-06, allocations: 3.938 kB / 0.647 GB, free: 38.55 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.251e-05/1.436e-05, allocations: 2.312 kB / 0.647 GB, free: 38.54 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.004311/0.004325, allocations: 6.864 MB / 0.6537 GB, free: 34.03 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001441/0.005766, allocations: 1.305 MB / 0.6549 GB, free: 33.12 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002085/0.005975, allocations: 8.719 kB / 0.6549 GB, free: 33.12 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0001796/0.006154, allocations: 108.9 kB / 0.655 GB, free: 33.05 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0003709/0.006525, allocations: 343.8 kB / 0.6554 GB, free: 32.8 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0003751/0.0069, allocations: 284.5 kB / 0.6556 GB, free: 32.62 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0007043/0.007605, allocations: 1.219 MB / 0.6568 GB, free: 31.93 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002456/0.00785, allocations: 183.8 kB / 0.657 GB, free: 31.81 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.000513/0.008363, allocations: 0.6171 MB / 0.6576 GB, free: 31.52 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004762/0.00884, allocations: 365.7 kB / 0.658 GB, free: 31.39 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001631/0.009003, allocations: 109.4 kB / 0.6581 GB, free: 31.39 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001225/0.009125, allocations: 112.9 kB / 0.6582 GB, free: 31.39 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 8.011e-05/0.009205, allocations: 196.7 kB / 0.6584 GB, free: 31.25 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0002563/0.009462, allocations: 354.7 kB / 0.6587 GB, free: 31.09 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0004782/0.00994, allocations: 0.7265 MB / 0.6594 GB, free: 30.69 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.154e-06/0.009942, allocations: 0 / 0.6594 GB, free: 30.69 MB / 0.5262 GB Notification: Performance of FrontEnd: time 7.82e-07/0.009943, allocations: 0 / 0.6594 GB, free: 30.69 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.156e-05/0.009954, allocations: 0 / 0.6594 GB, free: 30.69 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001214/0.01117, allocations: 1.414 MB / 0.6608 GB, free: 29.58 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.256e-05/0.0112, allocations: 9.812 kB / 0.6608 GB, free: 29.58 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001573/0.01136, allocations: 139 kB / 0.6609 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003978/0.01176, allocations: 448.7 kB / 0.6614 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.813e-05/0.01178, allocations: 46.03 kB / 0.6614 GB, free: 29.16 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.838e-05/0.01186, allocations: 71.77 kB / 0.6615 GB, free: 29.13 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0006545/0.01252, allocations: 0.6893 MB / 0.6621 GB, free: 28.7 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.747e-05/0.01254, allocations: 11.91 kB / 0.6622 GB, free: 28.7 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.802e-05/0.01258, allocations: 27 kB / 0.6622 GB, free: 28.68 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.389e-05/0.0126, allocations: 18.78 kB / 0.6622 GB, free: 28.68 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004561/0.01305, allocations: 472 kB / 0.6627 GB, free: 28.44 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00138/0.01443, allocations: 1.932 MB / 0.6645 GB, free: 27.01 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0006206/0.01505, allocations: 0.577 MB / 0.6651 GB, free: 26.64 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002425/0.0153, allocations: 344.1 kB / 0.6654 GB, free: 26.38 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 3.432e-05/0.01533, allocations: 14.03 kB / 0.6654 GB, free: 26.38 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005344/0.01586, allocations: 0.9586 MB / 0.6664 GB, free: 25.63 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.204e-06/0.01587, allocations: 0 / 0.6664 GB, free: 25.63 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002458/0.01832, allocations: 2.968 MB / 0.6693 GB, free: 23.57 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 9.653e-05/0.01842, allocations: 0.597 MB / 0.6699 GB, free: 22.87 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003611/0.01878, allocations: 0.5244 MB / 0.6704 GB, free: 22.59 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 4.93e-05/0.01883, allocations: 59.92 kB / 0.6704 GB, free: 22.54 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001215/0.01895, allocations: 350.4 kB / 0.6708 GB, free: 22.25 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001462/0.0191, allocations: 357.4 kB / 0.6711 GB, free: 21.97 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001731/0.01927, allocations: 190.5 kB / 0.6713 GB, free: 21.88 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 9.225e-05/0.01936, allocations: 0.5596 MB / 0.6718 GB, free: 21.35 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000329/0.01969, allocations: 458.1 kB / 0.6723 GB, free: 21 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004257/0.02012, allocations: 0.8649 MB / 0.6731 GB, free: 20.1 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0009502/0.02107, allocations: 1.547 MB / 0.6746 GB, free: 18.68 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.542e-06/0.02108, allocations: 3.281 kB / 0.6746 GB, free: 18.68 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.001074/0.02215, allocations: 1.378 MB / 0.676 GB, free: 17.79 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 5.362e-05/0.0222, allocations: 264.6 kB / 0.6762 GB, free: 17.5 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.808e-06/0.02221, allocations: 8.219 kB / 0.6762 GB, free: 17.5 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.158e-05/0.02224, allocations: 14.78 kB / 0.6763 GB, free: 17.5 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004786/0.02271, allocations: 252.7 kB / 0.6765 GB, free: 17.47 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.554e-05/0.02273, allocations: 21.61 kB / 0.6765 GB, free: 17.47 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003002/0.02303, allocations: 57.84 kB / 0.6766 GB, free: 17.45 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.964e-05/0.02308, allocations: 53.67 kB / 0.6766 GB, free: 17.44 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003492/0.02343, allocations: 0.5521 MB / 0.6772 GB, free: 16.96 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001103/0.02354, allocations: 130.5 kB / 0.6773 GB, free: 16.91 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.87e-05/0.02362, allocations: 80.67 kB / 0.6774 GB, free: 16.85 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.42e-06/0.02362, allocations: 8.5 kB / 0.6774 GB, free: 16.85 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.139e-05/0.02363, allocations: 1.344 kB / 0.6774 GB, free: 16.85 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.038e-05/0.02364, allocations: 6.016 kB / 0.6774 GB, free: 16.85 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001624/0.02527, allocations: 2.146 MB / 0.6795 GB, free: 15.46 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.256e-06/0.02527, allocations: 6.219 kB / 0.6795 GB, free: 15.46 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000427/0.0257, allocations: 158.5 kB / 0.6796 GB, free: 15.45 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.029e-06/0.0257, allocations: 5.344 kB / 0.6796 GB, free: 15.45 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.223e-05/0.02576, allocations: 33 kB / 0.6797 GB, free: 15.44 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.709e-06/0.02576, allocations: 7.781 kB / 0.6797 GB, free: 15.43 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.743e-06/0.02576, allocations: 3.938 kB / 0.6797 GB, free: 15.43 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001321/0.02708, allocations: 1.938 MB / 0.6816 GB, free: 14.14 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002139/0.0273, allocations: 164.2 kB / 0.6817 GB, free: 14.04 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001037/0.0274, allocations: 50.05 kB / 0.6818 GB, free: 14.02 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002643/0.02766, allocations: 38.75 kB / 0.6818 GB, free: 14.01 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001589/0.02782, allocations: 101.3 kB / 0.6819 GB, free: 13.98 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.017e-05/0.02786, allocations: 36.55 kB / 0.6819 GB, free: 13.97 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002443/0.02811, allocations: 349.8 kB / 0.6823 GB, free: 13.8 MB / 0.5262 GB Notification: Performance of sort global known variables: time 6e-08/0.02811, allocations: 1.594 kB / 0.6823 GB, free: 13.8 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0004899/0.0286, allocations: 245.9 kB / 0.6825 GB, free: 13.77 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001344/0.02873, allocations: 198.6 kB / 0.6827 GB, free: 13.63 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0008979/0.02963, allocations: 1.5 MB / 0.6842 GB, free: 12.45 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.924e-06/0.02963, allocations: 0 / 0.6842 GB, free: 12.45 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0004192/0.03005, allocations: 0.8153 MB / 0.685 GB, free: 11.8 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007739/0.03083, allocations: 286.1 kB / 0.6852 GB, free: 11.72 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002777/0.0336, allocations: 2.303 MB / 0.6875 GB, free: 10.23 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001248/0.03373, allocations: 174.7 kB / 0.6876 GB, free: 10.15 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0002825/0.03401, allocations: 95.67 kB / 0.6877 GB, free: 10.13 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001323/0.03414, allocations: 73.28 kB / 0.6878 GB, free: 10.11 MB / 0.5262 GB Notification: Performance of SimCode: time 7.61e-07/0.03414, allocations: 0 / 0.6878 GB, free: 10.11 MB / 0.5262 GB Notification: Performance of Templates: time 0.01372/0.04787, allocations: 14.07 MB / 0.7016 GB, free: 0.5195 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.048620445188135]