Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009437/0.0009437, allocations: 92.2 kB / 20.19 MB, free: 4.359 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009685/0.0009685, allocations: 173 kB / 23.49 MB, free: 1.055 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.8827/0.8827, allocations: 177.1 MB / 203.8 MB, free: 5.656 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.592/1.592, allocations: 273.5 MB / 0.5213 GB, free: 14.81 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.294e-06/2.294e-06, allocations: 0 / 0.647 GB, free: 38.62 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.948e-05/3.177e-05, allocations: 6.438 kB / 0.647 GB, free: 38.62 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.00764/0.007672, allocations: 11.13 MB / 0.6578 GB, free: 31.32 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003988/0.01166, allocations: 2.255 MB / 0.66 GB, free: 29.7 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001188/0.01285, allocations: 18.03 kB / 0.66 GB, free: 29.7 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0005383/0.01339, allocations: 226.8 kB / 0.6603 GB, free: 29.57 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.001398/0.01479, allocations: 0.6913 MB / 0.6609 GB, free: 29.05 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001029/0.01581, allocations: 0.6281 MB / 0.6616 GB, free: 28.59 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002298/0.01811, allocations: 2.676 MB / 0.6642 GB, free: 27.03 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005879/0.0187, allocations: 360.1 kB / 0.6645 GB, free: 26.79 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001756/0.02046, allocations: 1.362 MB / 0.6658 GB, free: 26.1 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0009779/0.02143, allocations: 0.7433 MB / 0.6666 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002775/0.02171, allocations: 279.3 kB / 0.6668 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000359/0.02207, allocations: 283 kB / 0.6671 GB, free: 25.8 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0001953/0.02226, allocations: 453.2 kB / 0.6675 GB, free: 25.46 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0007013/0.02297, allocations: 0.7628 MB / 0.6683 GB, free: 25.07 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001398/0.02436, allocations: 1.593 MB / 0.6698 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 4.849e-06/0.02437, allocations: 0.625 kB / 0.6698 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.263e-06/0.02437, allocations: 0 / 0.6698 GB, free: 24.13 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 3.37e-05/0.0244, allocations: 0.9688 kB / 0.6698 GB, free: 24.13 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002711/0.02712, allocations: 2.544 MB / 0.6723 GB, free: 22.21 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.462e-05/0.02716, allocations: 9.875 kB / 0.6723 GB, free: 22.21 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000386/0.02755, allocations: 287.5 kB / 0.6726 GB, free: 22.08 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009197/0.02847, allocations: 0.8448 MB / 0.6734 GB, free: 21.46 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.655e-05/0.02852, allocations: 85.17 kB / 0.6735 GB, free: 21.42 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001766/0.0287, allocations: 146.2 kB / 0.6737 GB, free: 21.37 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001523/0.03022, allocations: 1.339 MB / 0.675 GB, free: 20.54 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.529e-05/0.03028, allocations: 20.34 kB / 0.675 GB, free: 20.53 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.193e-05/0.03036, allocations: 48.59 kB / 0.675 GB, free: 20.5 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.369e-05/0.03038, allocations: 26.38 kB / 0.6751 GB, free: 20.5 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001075/0.03146, allocations: 0.9353 MB / 0.676 GB, free: 20.02 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00388/0.03534, allocations: 4.181 MB / 0.68 GB, free: 16.96 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001494/0.03683, allocations: 1.148 MB / 0.6812 GB, free: 16.21 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0006189/0.03745, allocations: 0.6765 MB / 0.6818 GB, free: 15.69 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 6.493e-05/0.03752, allocations: 29.25 kB / 0.6819 GB, free: 15.69 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001343/0.03886, allocations: 1.919 MB / 0.6837 GB, free: 14.23 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.929e-06/0.03886, allocations: 3.141 kB / 0.6837 GB, free: 14.23 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.006396/0.04526, allocations: 6.449 MB / 0.69 GB, free: 9.699 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002084/0.04547, allocations: 1.179 MB / 0.6912 GB, free: 8.316 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001049/0.04652, allocations: 0.8925 MB / 0.6921 GB, free: 7.93 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 0.0001794/0.0467, allocations: 102.5 kB / 0.6922 GB, free: 7.855 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003084/0.04701, allocations: 0.5788 MB / 0.6927 GB, free: 7.379 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004212/0.04743, allocations: 0.684 MB / 0.6934 GB, free: 6.828 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004242/0.04785, allocations: 370.7 kB / 0.6937 GB, free: 6.66 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.539e-05/0.04789, allocations: 482.5 kB / 0.6942 GB, free: 6.188 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0008177/0.0487, allocations: 0.8933 MB / 0.6951 GB, free: 5.484 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0009838/0.04969, allocations: 1.724 MB / 0.6968 GB, free: 3.578 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002332/0.05202, allocations: 3.1 MB / 0.6998 GB, free: 0.6289 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.191e-05/0.05204, allocations: 4.375 kB / 0.6998 GB, free: 0.6289 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.003195/0.05524, allocations: 2.726 MB / 0.7024 GB, free: 13.85 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001921/0.05543, allocations: 0.5145 MB / 0.703 GB, free: 13.22 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.193e-05/0.05545, allocations: 20 kB / 0.703 GB, free: 13.2 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.928e-05/0.05549, allocations: 28 kB / 0.703 GB, free: 13.18 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001026/0.05652, allocations: 0.4914 MB / 0.7035 GB, free: 12.68 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.079e-05/0.05655, allocations: 39.86 kB / 0.7035 GB, free: 12.64 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001036/0.05758, allocations: 112 kB / 0.7036 GB, free: 12.54 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001105/0.05769, allocations: 100 kB / 0.7037 GB, free: 12.44 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001105/0.0588, allocations: 1.005 MB / 0.7047 GB, free: 11.39 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003524/0.05915, allocations: 255 kB / 0.7049 GB, free: 11.14 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001828/0.05933, allocations: 157.6 kB / 0.7051 GB, free: 10.99 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.181e-05/0.05935, allocations: 16 kB / 0.7051 GB, free: 10.98 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.901e-05/0.05937, allocations: 7.938 kB / 0.7051 GB, free: 10.97 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.56e-05/0.05939, allocations: 11.95 kB / 0.7051 GB, free: 10.96 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004394/0.06378, allocations: 4.441 MB / 0.7095 GB, free: 6.324 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.753e-06/0.06379, allocations: 3.938 kB / 0.7095 GB, free: 6.32 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008946/0.06469, allocations: 327.6 kB / 0.7098 GB, free: 6 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.061e-05/0.0647, allocations: 7.469 kB / 0.7098 GB, free: 5.996 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001153/0.06481, allocations: 71.97 kB / 0.7099 GB, free: 5.926 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.936e-06/0.06482, allocations: 15.92 kB / 0.7099 GB, free: 5.91 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.013e-06/0.06482, allocations: 0 / 0.7099 GB, free: 5.91 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003188/0.06801, allocations: 3.836 MB / 0.7136 GB, free: 1.836 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007581/0.06877, allocations: 390.7 kB / 0.714 GB, free: 1.453 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002867/0.06905, allocations: 107.9 kB / 0.7141 GB, free: 1.348 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005832/0.06964, allocations: 79.95 kB / 0.7142 GB, free: 1.27 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002998/0.06994, allocations: 199.7 kB / 0.7144 GB, free: 1.074 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.937e-05/0.07002, allocations: 75.95 kB / 0.7144 GB, free: 1 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0005674/0.07058, allocations: 0.5568 MB / 0.715 GB, free: 444 kB / 0.5418 GB Notification: Performance of sort global known variables: time 2.4e-07/0.07058, allocations: 0 / 0.715 GB, free: 444 kB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001515/0.0721, allocations: 496 kB / 0.7154 GB, free: 15.94 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002973/0.0724, allocations: 309.7 kB / 0.7157 GB, free: 15.63 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002644/0.07504, allocations: 3.019 MB / 0.7187 GB, free: 12.21 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 4.358e-06/0.07505, allocations: 3.938 kB / 0.7187 GB, free: 12.2 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001262/0.07631, allocations: 1.64 MB / 0.7203 GB, free: 10.34 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002028/0.07834, allocations: 0.5771 MB / 0.7209 GB, free: 9.824 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006007/0.08434, allocations: 4.485 MB / 0.7252 GB, free: 5.336 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002481/0.08459, allocations: 296.4 kB / 0.7255 GB, free: 5.023 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0007928/0.08538, allocations: 187.6 kB / 0.7257 GB, free: 4.844 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000259/0.08564, allocations: 136.5 kB / 0.7258 GB, free: 4.711 MB / 0.5574 GB Notification: Performance of SimCode: time 2.014e-06/0.08564, allocations: 0 / 0.7258 GB, free: 4.711 MB / 0.5574 GB Notification: Performance of Templates: time 0.03456/0.1202, allocations: 30.23 MB / 0.7554 GB, free: 7.855 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.230740927858278]