Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001075/0.001075, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001073/0.001073, allocations: 173.3 kB / 23.49 MB, free: 1.062 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.004/1.004, allocations: 177.1 MB / 203.8 MB, free: 5.652 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.729/1.729, allocations: 273.5 MB / 0.5213 GB, free: 14.82 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.124e-06/2.124e-06, allocations: 2 kB / 0.647 GB, free: 38.72 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.771e-05/1.984e-05, allocations: 3.625 kB / 0.647 GB, free: 38.72 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001456/0.001476, allocations: 1.295 MB / 0.6482 GB, free: 37.86 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001924/0.001669, allocations: 56.14 kB / 0.6483 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.171e-05/0.00171, allocations: 0 / 0.6483 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 7.945e-05/0.00179, allocations: 0 / 0.6483 GB, free: 37.83 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.127e-05/0.001831, allocations: 10.05 kB / 0.6483 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001664/0.001997, allocations: 16.11 kB / 0.6483 GB, free: 37.82 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001514/0.002149, allocations: 148.6 kB / 0.6485 GB, free: 37.78 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.712e-05/0.002196, allocations: 4.859 kB / 0.6485 GB, free: 37.78 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001162/0.002312, allocations: 75.11 kB / 0.6485 GB, free: 37.76 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001416/0.002454, allocations: 71.86 kB / 0.6486 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.777e-05/0.002492, allocations: 9.844 kB / 0.6486 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.858e-05/0.00251, allocations: 7.719 kB / 0.6486 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.652e-05/0.002547, allocations: 34.3 kB / 0.6486 GB, free: 37.74 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 4.252e-05/0.002589, allocations: 32.98 kB / 0.6487 GB, free: 37.73 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001223/0.002711, allocations: 100.3 kB / 0.6488 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.004e-06/0.002713, allocations: 0 / 0.6488 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 5.41e-07/0.002714, allocations: 0.75 kB / 0.6488 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 3.958e-06/0.002718, allocations: 1.344 kB / 0.6488 GB, free: 37.7 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0009479/0.003666, allocations: 0.5946 MB / 0.6494 GB, free: 37.31 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.804e-05/0.003704, allocations: 10.94 kB / 0.6494 GB, free: 37.31 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.233e-05/0.003756, allocations: 7.688 kB / 0.6494 GB, free: 37.31 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001469/0.003903, allocations: 135.1 kB / 0.6495 GB, free: 37.17 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.174e-05/0.003915, allocations: 3.969 kB / 0.6495 GB, free: 37.17 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.587e-05/0.003931, allocations: 2.656 kB / 0.6495 GB, free: 37.17 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002976/0.004228, allocations: 162.8 kB / 0.6497 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.925e-06/0.004236, allocations: 1.812 kB / 0.6497 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.588e-05/0.004252, allocations: 2.594 kB / 0.6497 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.795e-06/0.00426, allocations: 384 / 0.6497 GB, free: 37.08 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 9.702e-05/0.004357, allocations: 29.05 kB / 0.6497 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002418/0.004599, allocations: 282.6 kB / 0.65 GB, free: 36.78 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 8.207e-05/0.004681, allocations: 43.7 kB / 0.65 GB, free: 36.74 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 8.078e-05/0.004762, allocations: 41.5 kB / 0.6501 GB, free: 36.72 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.603e-05/0.004778, allocations: 2.656 kB / 0.6501 GB, free: 36.72 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.947e-05/0.004797, allocations: 35.14 kB / 0.6501 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 8.92e-07/0.004798, allocations: 1.062 kB / 0.6501 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002942/0.005092, allocations: 114 kB / 0.6502 GB, free: 36.62 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.734e-05/0.005119, allocations: 55.11 kB / 0.6502 GB, free: 36.56 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.7e-05/0.005196, allocations: 170 kB / 0.6504 GB, free: 36.39 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.379e-05/0.00521, allocations: 33.5 kB / 0.6504 GB, free: 36.36 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.844e-05/0.005249, allocations: 136.7 kB / 0.6506 GB, free: 36.22 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.315e-05/0.005272, allocations: 37.45 kB / 0.6506 GB, free: 36.2 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.528e-05/0.005317, allocations: 35.7 kB / 0.6506 GB, free: 36.16 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.363e-05/0.005371, allocations: 0.4909 MB / 0.6511 GB, free: 35.66 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.878e-05/0.00543, allocations: 13.72 kB / 0.6511 GB, free: 35.66 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 6.002e-05/0.00549, allocations: 35.66 kB / 0.6512 GB, free: 35.64 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001131/0.005603, allocations: 64.31 kB / 0.6512 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.954e-06/0.005605, allocations: 0 / 0.6512 GB, free: 35.6 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001673/0.005772, allocations: 89.66 kB / 0.6513 GB, free: 35.56 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.24e-05/0.005784, allocations: 4.156 kB / 0.6513 GB, free: 35.56 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.641e-06/0.00579, allocations: 5.594 kB / 0.6513 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.329e-05/0.005803, allocations: 0 / 0.6513 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002232/0.006026, allocations: 77.98 kB / 0.6514 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.251e-06/0.006033, allocations: 3.688 kB / 0.6514 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001465/0.006179, allocations: 59.09 kB / 0.6515 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.132e-05/0.006191, allocations: 3.594 kB / 0.6515 GB, free: 35.54 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 5.686e-05/0.006247, allocations: 160.8 kB / 0.6516 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.052e-05/0.006268, allocations: 14.02 kB / 0.6516 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002883/0.006556, allocations: 180.7 kB / 0.6518 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.976e-06/0.006559, allocations: 6.156 kB / 0.6518 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.847e-06/0.006563, allocations: 1.469 kB / 0.6518 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.37e-06/0.006568, allocations: 3.375 kB / 0.6518 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001044/0.006673, allocations: 155.4 kB / 0.652 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.152e-06/0.006674, allocations: 1.688 kB / 0.652 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002125/0.006886, allocations: 87.27 kB / 0.652 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.854e-06/0.006888, allocations: 0 / 0.652 GB, free: 35.12 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.521e-05/0.006904, allocations: 4.969 kB / 0.6521 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.154e-06/0.006906, allocations: 2.156 kB / 0.6521 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.545e-06/0.006908, allocations: 9.188 kB / 0.6521 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0002061/0.007114, allocations: 172.4 kB / 0.6522 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.28e-05/0.007127, allocations: 13.08 kB / 0.6522 GB, free: 34.99 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.001e-05/0.007147, allocations: 5.469 kB / 0.6522 GB, free: 34.98 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001445/0.007292, allocations: 57.16 kB / 0.6523 GB, free: 34.98 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 7.078e-05/0.007362, allocations: 32.61 kB / 0.6523 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.177e-06/0.007372, allocations: 3.781 kB / 0.6523 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.836e-05/0.0074, allocations: 140.2 kB / 0.6525 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 5e-08/0.0074, allocations: 0 / 0.6525 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001414/0.007541, allocations: 27.69 kB / 0.6525 GB, free: 34.84 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.598e-05/0.007607, allocations: 97.75 kB / 0.6526 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001822/0.00779, allocations: 76.55 kB / 0.6527 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.382e-06/0.007791, allocations: 0 / 0.6527 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 8.193e-05/0.007873, allocations: 67.81 kB / 0.6527 GB, free: 34.7 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001464/0.008019, allocations: 18.08 kB / 0.6527 GB, free: 34.7 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0005747/0.008594, allocations: 245.5 kB / 0.653 GB, free: 34.53 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.699e-05/0.008621, allocations: 70.61 kB / 0.653 GB, free: 34.46 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 7.297e-05/0.008694, allocations: 26.42 kB / 0.6531 GB, free: 34.45 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 8.339e-05/0.008777, allocations: 30.25 kB / 0.6531 GB, free: 34.44 MB / 0.5262 GB
Notification: Performance of SimCode: time 6.21e-07/0.008778, allocations: 0 / 0.6531 GB, free: 34.44 MB / 0.5262 GB
Notification: Performance of Templates: time 0.003983/0.01276, allocations: 2.876 MB / 0.6559 GB, free: 34.2 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.081350442022085]