Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001033/0.001033, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001635/0.001635, allocations: 177 kB / 23.49 MB, free: 1.059 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.01/1.01, allocations: 177.1 MB / 203.8 MB, free: 5.598 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08915/0.08915, allocations: 17.46 MB / 277.7 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.384e-06/2.384e-06, allocations: 0 / 353.6 MB, free: 10.16 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.168e-05/2.407e-05, allocations: 2.312 kB / 353.6 MB, free: 10.16 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.008756/0.00878, allocations: 8.506 MB / 362.1 MB, free: 1.617 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01784/0.02662, allocations: 23.37 MB / 385.4 MB, free: 10.16 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0008921/0.02751, allocations: 27.81 kB / 385.5 MB, free: 10.13 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0009687/0.02848, allocations: 488 kB / 385.9 MB, free: 9.652 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003886/0.03237, allocations: 2.117 MB / 388.1 MB, free: 7.52 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005979/0.03835, allocations: 3.145 MB / 391.2 MB, free: 4.355 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.00256/0.04091, allocations: 2.588 MB / 393.8 MB, free: 1.754 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001248/0.04216, allocations: 1.194 MB / 395 MB, free: 0.5156 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001345/0.0435, allocations: 1.72 MB / 396.7 MB, free: 14.79 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.00098/0.04448, allocations: 1.138 MB / 397.8 MB, free: 13.65 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001965/0.04468, allocations: 216 kB / 398 MB, free: 13.44 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004749/0.04943, allocations: 2.487 MB / 400.5 MB, free: 10.95 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003029/0.04973, allocations: 0.5217 MB / 401.1 MB, free: 10.43 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0005641/0.05029, allocations: 0.8068 MB / 401.9 MB, free: 9.617 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004569/0.05486, allocations: 4.7 MB / 406.6 MB, free: 4.898 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.988e-06/0.05487, allocations: 0 / 406.6 MB, free: 4.898 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.543e-06/0.05487, allocations: 0 / 406.6 MB, free: 4.898 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 1.316e-05/0.05488, allocations: 0 / 406.6 MB, free: 4.898 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.002891/0.05777, allocations: 2.753 MB / 409.3 MB, free: 2.094 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.865e-05/0.05781, allocations: 16.03 kB / 409.3 MB, free: 2.078 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001244/0.05905, allocations: 0.6847 MB / 410 MB, free: 1.391 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009622/0.06002, allocations: 0.9158 MB / 410.9 MB, free: 452 kB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001325/0.06015, allocations: 243 kB / 411.2 MB, free: 184 kB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.1323/0.1924, allocations: 186.5 kB / 411.4 MB, free: 65.47 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.003965/0.1964, allocations: 1.679 MB / 413 MB, free: 65.3 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.258e-05/0.1964, allocations: 5.688 kB / 413 MB, free: 65.3 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001689/0.1966, allocations: 72.41 kB / 413.1 MB, free: 65.26 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.628e-05/0.1966, allocations: 43.47 kB / 413.2 MB, free: 65.26 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003433/0.2001, allocations: 1.723 MB / 414.9 MB, free: 65.01 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007197/0.2073, allocations: 5.084 MB / 420 MB, free: 62.41 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0028/0.2101, allocations: 2.108 MB / 422.1 MB, free: 61.91 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0005587/0.2106, allocations: 0.5249 MB / 422.6 MB, free: 61.79 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004485/0.2151, allocations: 4.214 MB / 426.8 MB, free: 59.23 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.072e-05/0.2151, allocations: 46.39 kB / 426.9 MB, free: 59.18 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=122): time 2.504e-06/0.2151, allocations: 0 / 426.9 MB, free: 59.18 MB / 330.7 MB
Notification: Performance of matching and sorting (n=150): time 0.0116/0.2267, allocations: 5.156 MB / 432 MB, free: 54.09 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.082e-05/0.2268, allocations: 98.36 kB / 432.1 MB, free: 53.98 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005713/0.2273, allocations: 0.882 MB / 433 MB, free: 53.11 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.697e-05/0.2274, allocations: 49.7 kB / 433 MB, free: 53.05 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.00028/0.2277, allocations: 0.9224 MB / 434 MB, free: 52.23 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002225/0.2279, allocations: 0.5351 MB / 434.5 MB, free: 51.77 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002743/0.2282, allocations: 373.1 kB / 434.9 MB, free: 51.4 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 7.459e-05/0.2282, allocations: 0.5355 MB / 435.4 MB, free: 50.86 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000447/0.2287, allocations: 347.8 kB / 435.7 MB, free: 50.51 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006781/0.2294, allocations: 1.358 MB / 437.1 MB, free: 48.69 MB / 330.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001421/0.2308, allocations: 1.897 MB / 439 MB, free: 46.36 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.113e-06/0.2308, allocations: 4 kB / 439 MB, free: 46.36 MB / 330.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.00372/0.2345, allocations: 2.213 MB / 441.2 MB, free: 44.12 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.346e-05/0.2345, allocations: 14.97 kB / 441.2 MB, free: 44.11 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.968e-05/0.2345, allocations: 24 kB / 441.2 MB, free: 44.08 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.004016/0.2386, allocations: 1.1 MB / 442.3 MB, free: 42.97 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009914/0.2396, allocations: 0.5227 MB / 442.9 MB, free: 42.45 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005458/0.245, allocations: 9.106 MB / 452 MB, free: 32.87 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006598/0.2457, allocations: 71.98 kB / 452 MB, free: 32.8 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.415e-05/0.2458, allocations: 108 kB / 452.1 MB, free: 32.69 MB / 330.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.000321/0.2461, allocations: 303 kB / 452.4 MB, free: 32.4 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001898/0.2463, allocations: 183.1 kB / 452.6 MB, free: 32.22 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00388/0.2502, allocations: 2.168 MB / 454.8 MB, free: 29.99 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.941e-06/0.2502, allocations: 16 kB / 454.8 MB, free: 29.97 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.351e-06/0.2502, allocations: 4 kB / 454.8 MB, free: 29.97 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.398e-06/0.2502, allocations: 7.969 kB / 454.8 MB, free: 29.96 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002381/0.2526, allocations: 1.97 MB / 456.8 MB, free: 27.94 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.989e-06/0.2526, allocations: 4 kB / 456.8 MB, free: 27.93 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006836/0.2532, allocations: 303.7 kB / 457.1 MB, free: 27.64 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.004594/0.2578, allocations: 1.212 MB / 458.3 MB, free: 26.4 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.632e-05/0.2579, allocations: 43.97 kB / 458.3 MB, free: 26.36 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005206/0.2631, allocations: 10.71 MB / 469.1 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.424e-06/0.2631, allocations: 4 kB / 469.1 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004042/0.2672, allocations: 2.31 MB / 471.4 MB, free: 12.66 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001686/0.2673, allocations: 120.2 kB / 471.5 MB, free: 12.54 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001168/0.2674, allocations: 36 kB / 471.5 MB, free: 12.5 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000385/0.2678, allocations: 31.94 kB / 471.6 MB, free: 12.47 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002793/0.2681, allocations: 133 kB / 471.7 MB, free: 12.34 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.991e-05/0.2682, allocations: 51.98 kB / 471.7 MB, free: 12.29 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0003991/0.2686, allocations: 0.5174 MB / 472.2 MB, free: 11.77 MB / 330.7 MB
Notification: Performance of sort global known variables: time 6e-08/0.2686, allocations: 0 / 472.2 MB, free: 11.77 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.002225/0.2708, allocations: 1.062 MB / 473.3 MB, free: 10.71 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001256/0.2721, allocations: 1.167 MB / 474.5 MB, free: 9.672 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001761/0.2738, allocations: 1.957 MB / 476.4 MB, free: 7.645 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.525e-06/0.2738, allocations: 3.828 kB / 476.4 MB, free: 7.645 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0008988/0.2747, allocations: 1.479 MB / 477.9 MB, free: 6.07 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008427/0.2756, allocations: 342.5 kB / 478.3 MB, free: 5.742 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003158/0.2787, allocations: 2.808 MB / 481.1 MB, free: 2.848 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001731/0.2789, allocations: 292.5 kB / 481.3 MB, free: 2.535 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0006258/0.2795, allocations: 314.8 kB / 481.7 MB, free: 2.223 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002501/0.2798, allocations: 200.4 kB / 481.9 MB, free: 2.027 MB / 330.7 MB
Notification: Performance of SimCode: time 6.61e-07/0.2798, allocations: 3.828 kB / 481.9 MB, free: 2.027 MB / 330.7 MB
Notification: Performance of Templates: time 0.03846/0.3182, allocations: 38.3 MB / 0.508 GB, free: 12.02 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.146850012941286]