Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001035/0.001035, allocations: 92.2 kB / 20.19 MB, free: 4.352 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.007893/0.007893, allocations: 173 kB / 23.49 MB, free: 1.051 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.003/1.003, allocations: 177.1 MB / 203.8 MB, free: 5.629 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09277/0.09277, allocations: 17.45 MB / 277.7 MB, free: 11.62 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.774e-06/1.774e-06, allocations: 0 / 353.6 MB, free: 10.16 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.268e-05/2.446e-05, allocations: 2.312 kB / 353.6 MB, free: 10.16 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.03226/0.03228, allocations: 26.85 MB / 380.4 MB, free: 15.45 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.007937/0.04022, allocations: 6.313 MB / 386.7 MB, free: 9.113 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002993/0.04052, allocations: 11.88 kB / 386.7 MB, free: 9.102 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0005069/0.04103, allocations: 146.9 kB / 386.9 MB, free: 8.957 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0006203/0.04165, allocations: 269.7 kB / 387.2 MB, free: 8.691 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001939/0.04359, allocations: 1.005 MB / 388.2 MB, free: 7.68 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0006646/0.04425, allocations: 0.5291 MB / 388.7 MB, free: 7.148 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003086/0.04456, allocations: 173 kB / 388.9 MB, free: 6.977 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0003555/0.04492, allocations: 323.3 kB / 389.2 MB, free: 6.66 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003502/0.04527, allocations: 235.5 kB / 389.4 MB, free: 6.43 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 6.418e-05/0.04533, allocations: 28 kB / 389.4 MB, free: 6.402 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0009659/0.0463, allocations: 0.5224 MB / 389.9 MB, free: 5.879 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0001179/0.04641, allocations: 91.66 kB / 390 MB, free: 5.789 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001637/0.04658, allocations: 147.6 kB / 390.2 MB, free: 5.645 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001394/0.04797, allocations: 1.035 MB / 391.2 MB, free: 4.605 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.182e-06/0.04798, allocations: 0 / 391.2 MB, free: 4.605 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.613e-06/0.04798, allocations: 0 / 391.2 MB, free: 4.605 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 9.077e-06/0.04799, allocations: 0 / 391.2 MB, free: 4.605 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.001093/0.04908, allocations: 0.8335 MB / 392.1 MB, free: 3.73 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.182e-05/0.04912, allocations: 11.97 kB / 392.1 MB, free: 3.719 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.000598/0.04972, allocations: 183.7 kB / 392.2 MB, free: 3.539 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000545/0.05027, allocations: 348.2 kB / 392.6 MB, free: 3.172 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.926e-05/0.0503, allocations: 25.02 kB / 392.6 MB, free: 3.148 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 5.14e-05/0.05035, allocations: 24.38 kB / 392.6 MB, free: 3.125 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005217/0.05087, allocations: 400.3 kB / 393 MB, free: 2.688 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.543e-05/0.05088, allocations: 3.938 kB / 393 MB, free: 2.684 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.287e-05/0.05093, allocations: 12 kB / 393 MB, free: 2.672 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.333e-05/0.05094, allocations: 4 kB / 393 MB, free: 2.668 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007178/0.05166, allocations: 418.5 kB / 393.4 MB, free: 2.254 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002015/0.05367, allocations: 2.016 MB / 395.5 MB, free: 160 kB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002867/0.05396, allocations: 103 kB / 395.6 MB, free: 44 kB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001464/0.05411, allocations: 54.66 kB / 395.6 MB, free: 15.99 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.00161/0.05572, allocations: 1.003 MB / 396.6 MB, free: 14.96 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.647e-05/0.05574, allocations: 33.39 kB / 396.7 MB, free: 14.92 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.683e-06/0.05574, allocations: 0 / 396.7 MB, free: 14.92 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0003699/0.05611, allocations: 137.7 kB / 396.8 MB, free: 14.78 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.81e-05/0.05615, allocations: 51.41 kB / 396.8 MB, free: 14.72 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004086/0.05656, allocations: 434.5 kB / 397.3 MB, free: 14.28 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.971e-05/0.05658, allocations: 29.7 kB / 397.3 MB, free: 14.24 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002085/0.05679, allocations: 326.3 kB / 397.6 MB, free: 13.92 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 3.278e-05/0.05682, allocations: 35.73 kB / 397.6 MB, free: 13.88 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.000108/0.05693, allocations: 87.25 kB / 397.7 MB, free: 13.79 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001747/0.0571, allocations: 0.5237 MB / 398.3 MB, free: 13.25 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 8.626e-05/0.05719, allocations: 31.97 kB / 398.3 MB, free: 13.22 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002757/0.05747, allocations: 349 kB / 398.6 MB, free: 12.73 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004149/0.05788, allocations: 424.6 kB / 399 MB, free: 12.17 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.163e-06/0.05789, allocations: 4 kB / 399 MB, free: 12.17 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0005292/0.05842, allocations: 321.7 kB / 399.4 MB, free: 11.85 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.047e-05/0.05844, allocations: 10.97 kB / 399.4 MB, free: 11.84 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.123e-05/0.05845, allocations: 8 kB / 399.4 MB, free: 11.83 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.407e-05/0.05847, allocations: 20 kB / 399.4 MB, free: 11.81 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002487/0.05872, allocations: 83.89 kB / 399.5 MB, free: 11.73 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.934e-05/0.05874, allocations: 23.88 kB / 399.5 MB, free: 11.71 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002167/0.05896, allocations: 43.72 kB / 399.5 MB, free: 11.66 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.991e-05/0.059, allocations: 24 kB / 399.6 MB, free: 11.64 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001368/0.05914, allocations: 188.3 kB / 399.8 MB, free: 11.45 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 6.711e-05/0.0592, allocations: 39.8 kB / 399.8 MB, free: 11.41 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000456/0.05966, allocations: 249.5 kB / 400 MB, free: 11.12 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.605e-06/0.05966, allocations: 0 / 400 MB, free: 11.12 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.158e-06/0.05966, allocations: 0 / 400 MB, free: 11.12 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.632e-06/0.05967, allocations: 3.984 kB / 400 MB, free: 11.12 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0005044/0.06018, allocations: 0.547 MB / 400.6 MB, free: 10.53 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.164e-06/0.06018, allocations: 0 / 400.6 MB, free: 10.53 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 1.431e-05/0.06019, allocations: 0 / 400.6 MB, free: 10.53 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.354e-06/0.06019, allocations: 8.062 kB / 400.6 MB, free: 10.52 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.087e-06/0.0602, allocations: 3.984 kB / 400.6 MB, free: 10.52 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.906e-06/0.06021, allocations: 0 / 400.6 MB, free: 10.52 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.593e-06/0.06021, allocations: 0 / 400.6 MB, free: 10.52 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001233/0.06033, allocations: 108.1 kB / 400.7 MB, free: 10.39 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 4.534e-05/0.06038, allocations: 27.8 kB / 400.7 MB, free: 10.36 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.713e-05/0.06042, allocations: 11.89 kB / 400.7 MB, free: 10.35 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 6.744e-05/0.06049, allocations: 0 / 400.7 MB, free: 10.35 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.692e-05/0.06051, allocations: 0 / 400.7 MB, free: 10.35 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.54e-06/0.06051, allocations: 3.938 kB / 400.7 MB, free: 10.34 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0003013/0.06082, allocations: 307 kB / 401 MB, free: 10.04 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.1e-07/0.06082, allocations: 4.031 kB / 401.1 MB, free: 10.04 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0006017/0.06142, allocations: 183.3 kB / 401.2 MB, free: 9.859 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0005037/0.06192, allocations: 306.5 kB / 401.5 MB, free: 9.547 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0002639/0.06218, allocations: 130 kB / 401.7 MB, free: 9.418 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.924e-06/0.06219, allocations: 0 / 401.7 MB, free: 9.418 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 1.229e-05/0.0622, allocations: 11.69 kB / 401.7 MB, free: 9.402 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004439/0.06264, allocations: 80.45 kB / 401.7 MB, free: 9.328 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001424/0.06407, allocations: 0.522 MB / 402.3 MB, free: 8.777 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 6.814e-05/0.06413, allocations: 100.5 kB / 402.4 MB, free: 8.66 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0002573/0.06439, allocations: 85.62 kB / 402.4 MB, free: 8.578 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 8.524e-05/0.06448, allocations: 44.48 kB / 402.5 MB, free: 8.535 MB / 330.7 MB
Notification: Performance of SimCode: time 6.71e-07/0.06448, allocations: 0 / 402.5 MB, free: 8.535 MB / 330.7 MB
Notification: Performance of Templates: time 0.01071/0.07519, allocations: 6.187 MB / 408.7 MB, free: 2.414 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.127081587910652]