Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009594/0.0009594, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001037/0.001037, allocations: 177 kB / 23.5 MB, free: 1.055 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.022/1.022, allocations: 177.1 MB / 203.8 MB, free: 5.652 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1063/0.1063, allocations: 17.47 MB / 277.7 MB, free: 11.63 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.283e-06/1.283e-06, allocations: 0 / 353.6 MB, free: 10.19 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.608e-05/2.736e-05, allocations: 8.641 kB / 353.6 MB, free: 10.18 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.02992/0.02995, allocations: 39.46 MB / 393 MB, free: 2.82 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01595/0.0459, allocations: 11.73 MB / 404.8 MB, free: 7.039 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002374/0.04828, allocations: 111.1 kB / 404.9 MB, free: 6.93 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004206/0.05248, allocations: 2.128 MB / 407 MB, free: 4.789 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003567/0.05605, allocations: 1.97 MB / 409 MB, free: 2.805 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.2041/0.2601, allocations: 4.516 MB / 413.5 MB, free: 35.95 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006903/0.267, allocations: 4.79 MB / 418.3 MB, free: 35.02 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001493/0.2685, allocations: 0.8171 MB / 419.1 MB, free: 34.79 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004944/0.2735, allocations: 2.634 MB / 421.7 MB, free: 34.57 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003277/0.2767, allocations: 2.105 MB / 423.8 MB, free: 34.4 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0005823/0.2773, allocations: 403.9 kB / 424.2 MB, free: 34.4 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004216/0.2815, allocations: 2.142 MB / 426.4 MB, free: 34.33 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0008336/0.2824, allocations: 1.384 MB / 427.8 MB, free: 33.84 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002066/0.2844, allocations: 1.506 MB / 429.3 MB, free: 33.21 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.007937/0.2924, allocations: 5.67 MB / 434.9 MB, free: 30.96 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 7.093e-06/0.2924, allocations: 0 / 434.9 MB, free: 30.96 MB / 330.7 MB
Notification: Performance of FrontEnd: time 2.645e-06/0.2924, allocations: 0 / 434.9 MB, free: 30.96 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002418/0.2926, allocations: 0 / 434.9 MB, free: 30.96 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.008287/0.3009, allocations: 5.85 MB / 440.8 MB, free: 27.19 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.258e-05/0.3009, allocations: 10.38 kB / 440.8 MB, free: 27.19 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.00283/0.3038, allocations: 2.174 MB / 443 MB, free: 25.2 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.00439/0.3082, allocations: 2.532 MB / 445.5 MB, free: 22.74 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0004421/0.3086, allocations: 0.6416 MB / 446.1 MB, free: 22.04 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005744/0.3092, allocations: 398.6 kB / 446.5 MB, free: 21.66 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.009791/0.319, allocations: 5.785 MB / 452.3 MB, free: 15.87 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.7e-05/0.3191, allocations: 2.812 kB / 452.3 MB, free: 15.87 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003039/0.3194, allocations: 162.1 kB / 452.5 MB, free: 15.72 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0005533/0.3199, allocations: 0.5948 MB / 453.1 MB, free: 15.12 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01161/0.3315, allocations: 7.475 MB / 460.5 MB, free: 7.637 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02027/0.3518, allocations: 20.13 MB / 480.7 MB, free: 3.855 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.00219/0.354, allocations: 1.808 MB / 482.5 MB, free: 2.07 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001809/0.3558, allocations: 1.305 MB / 483.8 MB, free: 0.7578 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01456/0.3704, allocations: 12.33 MB / 496.1 MB, free: 4.504 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.192e-05/0.3704, allocations: 62.61 kB / 496.2 MB, free: 4.438 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.587e-06/0.3704, allocations: 0 / 496.2 MB, free: 4.438 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.04932/0.4197, allocations: 20.68 MB / 0.5047 GB, free: 15.82 MB / 394.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.978e-05/0.4198, allocations: 77.41 kB / 0.5048 GB, free: 15.73 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00283/0.4226, allocations: 2.421 MB / 0.5072 GB, free: 13.3 MB / 394.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0003476/0.423, allocations: 72.36 kB / 0.5072 GB, free: 13.22 MB / 394.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001739/0.4247, allocations: 2.47 MB / 0.5097 GB, free: 10.75 MB / 394.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001009/0.4257, allocations: 1.152 MB / 0.5108 GB, free: 9.609 MB / 394.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001706/0.4274, allocations: 1.019 MB / 0.5118 GB, free: 8.582 MB / 394.7 MB
Notification: Performance of setup shared object (initialization): time 0.000107/0.4275, allocations: 476.8 kB / 0.5122 GB, free: 8.113 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.002865/0.4304, allocations: 1.92 MB / 0.5141 GB, free: 6.191 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003442/0.4338, allocations: 3.603 MB / 0.5176 GB, free: 1.906 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.00896/0.4428, allocations: 8.355 MB / 0.5258 GB, free: 9.062 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.2337939289864153]