Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001/0.001, allocations: 92.2 kB / 20.19 MB, free: 4.352 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009648/0.0009648, allocations: 173 kB / 23.49 MB, free: 1.051 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9819/0.9819, allocations: 177.1 MB / 203.8 MB, free: 5.609 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1315/0.1315, allocations: 17.47 MB / 277.7 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.753e-06/1.753e-06, allocations: 0 / 353.6 MB, free: 10.17 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.112e-05/3.287e-05, allocations: 2.312 kB / 353.6 MB, free: 10.17 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.04086/0.04089, allocations: 39.47 MB / 393 MB, free: 2.793 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01555/0.05644, allocations: 11.72 MB / 404.8 MB, free: 7.023 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003201/0.05964, allocations: 107.1 kB / 404.9 MB, free: 6.918 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004152/0.06379, allocations: 2.136 MB / 407 MB, free: 4.77 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00426/0.06805, allocations: 1.97 MB / 409 MB, free: 2.785 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1654/0.2335, allocations: 4.519 MB / 413.5 MB, free: 35.93 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.006571/0.2401, allocations: 4.779 MB / 418.3 MB, free: 35.01 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001269/0.2413, allocations: 0.8275 MB / 419.1 MB, free: 34.77 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004892/0.2462, allocations: 2.638 MB / 421.7 MB, free: 34.56 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003801/0.25, allocations: 2.099 MB / 423.8 MB, free: 34.39 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001396/0.2514, allocations: 407.9 kB / 424.2 MB, free: 34.39 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005018/0.2564, allocations: 2.144 MB / 426.4 MB, free: 34.31 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001192/0.2576, allocations: 1.383 MB / 427.8 MB, free: 33.83 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002504/0.2601, allocations: 1.498 MB / 429.3 MB, free: 33.2 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.007228/0.2674, allocations: 5.674 MB / 434.9 MB, free: 30.95 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.759e-06/0.2674, allocations: 2.688 kB / 434.9 MB, free: 30.95 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.453e-06/0.2674, allocations: 0 / 434.9 MB, free: 30.95 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002213/0.2676, allocations: 0 / 434.9 MB, free: 30.95 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.007162/0.2748, allocations: 5.848 MB / 440.8 MB, free: 27.18 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.935e-05/0.2748, allocations: 9.594 kB / 440.8 MB, free: 27.18 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002446/0.2772, allocations: 2.169 MB / 443 MB, free: 25.21 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002536/0.2798, allocations: 2.541 MB / 445.5 MB, free: 22.75 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002492/0.28, allocations: 0.6354 MB / 446.1 MB, free: 22.05 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003185/0.2804, allocations: 396.1 kB / 446.5 MB, free: 21.67 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.005695/0.286, allocations: 5.793 MB / 452.3 MB, free: 15.88 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.461e-05/0.2861, allocations: 192 / 452.3 MB, free: 15.88 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001829/0.2863, allocations: 158.5 kB / 452.5 MB, free: 15.73 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003608/0.2866, allocations: 0.603 MB / 453.1 MB, free: 15.13 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.007456/0.2941, allocations: 7.472 MB / 460.5 MB, free: 7.645 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.03011/0.3242, allocations: 20.13 MB / 480.7 MB, free: 3.863 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003536/0.3277, allocations: 1.817 MB / 482.5 MB, free: 2.07 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.002366/0.3301, allocations: 1.297 MB / 483.8 MB, free: 0.7656 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01882/0.3489, allocations: 12.32 MB / 496.1 MB, free: 4.512 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.805e-05/0.349, allocations: 62.02 kB / 496.2 MB, free: 4.445 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.839e-06/0.349, allocations: 2.672 kB / 496.2 MB, free: 4.445 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.04452/0.3935, allocations: 20.69 MB / 0.5047 GB, free: 15.83 MB / 394.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.03e-05/0.3936, allocations: 77.39 kB / 0.5048 GB, free: 15.74 MB / 394.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002437/0.396, allocations: 2.418 MB / 0.5072 GB, free: 13.3 MB / 394.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0003568/0.3963, allocations: 65.7 kB / 0.5072 GB, free: 13.23 MB / 394.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001306/0.3977, allocations: 2.47 MB / 0.5097 GB, free: 10.75 MB / 394.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0008704/0.3985, allocations: 1.152 MB / 0.5108 GB, free: 9.617 MB / 394.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001327/0.3999, allocations: 1.021 MB / 0.5118 GB, free: 8.59 MB / 394.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001063/0.4, allocations: 476.8 kB / 0.5122 GB, free: 8.121 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.00252/0.4025, allocations: 1.92 MB / 0.5141 GB, free: 6.199 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.003275/0.4058, allocations: 3.603 MB / 0.5176 GB, free: 1.914 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.008867/0.4146, allocations: 8.354 MB / 0.5258 GB, free: 9.066 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.189588862005621]