Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001231/0.001231, allocations: 92.2 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001692/0.001692, allocations: 173 kB / 23.49 MB, free: 1.062 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9911/0.9911, allocations: 177.1 MB / 203.8 MB, free: 5.641 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09988/0.09988, allocations: 17.46 MB / 277.7 MB, free: 11.63 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.814e-06/1.814e-06, allocations: 0 / 353.5 MB, free: 10.22 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.552e-05/2.733e-05, allocations: 6.25 kB / 353.5 MB, free: 10.21 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.03599/0.03602, allocations: 39.84 MB / 393.4 MB, free: 2.465 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01833/0.05435, allocations: 11.98 MB / 405.4 MB, free: 6.438 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003552/0.0579, allocations: 95.31 kB / 405.5 MB, free: 6.344 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.005058/0.06296, allocations: 2.261 MB / 407.7 MB, free: 4.07 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005732/0.06869, allocations: 2.009 MB / 409.7 MB, free: 2.047 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1758/0.2445, allocations: 4.574 MB / 414.3 MB, free: 35.41 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007848/0.2524, allocations: 5.019 MB / 419.3 MB, free: 34.29 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002356/0.2547, allocations: 1.329 MB / 420.6 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.007116/0.2618, allocations: 3.146 MB / 423.8 MB, free: 33.75 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004925/0.2668, allocations: 2.412 MB / 426.2 MB, free: 33.19 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001253/0.268, allocations: 0.5283 MB / 426.7 MB, free: 33.19 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006217/0.2742, allocations: 2.322 MB / 429.1 MB, free: 32.88 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001365/0.2756, allocations: 1.703 MB / 430.8 MB, free: 31.98 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003179/0.2788, allocations: 1.788 MB / 432.5 MB, free: 31.22 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0101/0.2889, allocations: 6.625 MB / 439.2 MB, free: 27.94 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.941e-06/0.2889, allocations: 0 / 439.2 MB, free: 27.94 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.613e-06/0.2889, allocations: 2.656 kB / 439.2 MB, free: 27.94 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001655/0.2891, allocations: 2.219 kB / 439.2 MB, free: 27.94 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.008856/0.2979, allocations: 6.643 MB / 445.8 MB, free: 21.79 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.922e-05/0.298, allocations: 14.69 kB / 445.8 MB, free: 21.78 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003487/0.3014, allocations: 2.283 MB / 448.1 MB, free: 19.52 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003081/0.3045, allocations: 2.597 MB / 450.7 MB, free: 17.05 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003152/0.3048, allocations: 0.7234 MB / 451.4 MB, free: 16.24 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004573/0.3053, allocations: 459.3 kB / 451.9 MB, free: 15.8 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.007132/0.3124, allocations: 5.809 MB / 457.7 MB, free: 9.969 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.788e-05/0.3125, allocations: 192 / 457.7 MB, free: 9.969 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000291/0.3128, allocations: 185 kB / 457.9 MB, free: 9.797 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004183/0.3132, allocations: 0.5518 MB / 458.4 MB, free: 9.246 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.006841/0.32, allocations: 6.367 MB / 464.8 MB, free: 2.875 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02746/0.3475, allocations: 22.73 MB / 487.5 MB, free: 12.56 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003003/0.3505, allocations: 1.984 MB / 489.5 MB, free: 10.59 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001909/0.3524, allocations: 1.412 MB / 490.9 MB, free: 9.168 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.015/0.3674, allocations: 14.29 MB / 0.4934 GB, free: 10.95 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.455e-05/0.3675, allocations: 55.39 kB / 0.4934 GB, free: 10.88 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=289): time 4.478e-06/0.3675, allocations: 0 / 0.4934 GB, free: 10.88 MB / 378.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.211556612048298]