Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00106/0.00106, allocations: 92.2 kB / 20.19 MB, free: 4.359 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001122/0.001122, allocations: 173 kB / 23.49 MB, free: 1.055 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.001/1.001, allocations: 177.1 MB / 203.8 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08944/0.08944, allocations: 17.46 MB / 277.7 MB, free: 11.64 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction")
translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.623e-06/1.623e-06, allocations: 0 / 353.5 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.799e-05/2.962e-05, allocations: 6.25 kB / 353.5 MB, free: 10.2 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction): time 0.03705/0.03708, allocations: 47.17 MB / 400.7 MB, free: 11.1 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.182/0.2191, allocations: 13.84 MB / 414.6 MB, free: 33.71 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.005057/0.2242, allocations: 153.6 kB / 414.7 MB, free: 33.71 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006533/0.2307, allocations: 2.642 MB / 417.4 MB, free: 33.66 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.007928/0.2386, allocations: 2.839 MB / 420.2 MB, free: 33 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.008678/0.2473, allocations: 5.108 MB / 425.3 MB, free: 32.65 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.01109/0.2584, allocations: 7.498 MB / 432.8 MB, free: 29.48 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002349/0.2608, allocations: 1.677 MB / 434.5 MB, free: 28.58 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.007098/0.2679, allocations: 4.554 MB / 439 MB, free: 25.91 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.005792/0.2736, allocations: 3.528 MB / 442.6 MB, free: 24.15 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001732/0.2754, allocations: 0.7446 MB / 443.3 MB, free: 24.14 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005549/0.2809, allocations: 2.552 MB / 445.9 MB, free: 22.55 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001392/0.2823, allocations: 2.475 MB / 448.3 MB, free: 20.19 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.004001/0.2863, allocations: 2.578 MB / 450.9 MB, free: 17.71 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01241/0.2987, allocations: 8.86 MB / 459.8 MB, free: 9.66 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 1.247e-05/0.2987, allocations: 0 / 459.8 MB, free: 9.66 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.462e-06/0.2987, allocations: 0 / 459.8 MB, free: 9.66 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002713/0.299, allocations: 0 / 459.8 MB, free: 9.66 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 2093
 * Number of variables: 2093
Notification: Performance of Generate backend data structure: time 0.01121/0.3102, allocations: 9.537 MB / 469.3 MB, free: 168 kB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.892e-05/0.3103, allocations: 14.69 kB / 469.3 MB, free: 156 kB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.005088/0.3153, allocations: 3.505 MB / 472.8 MB, free: 12.68 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.006583/0.3219, allocations: 3.862 MB / 476.7 MB, free: 8.82 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0005799/0.3225, allocations: 1.1 MB / 477.8 MB, free: 7.598 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0006231/0.3231, allocations: 0.6469 MB / 478.4 MB, free: 6.965 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01024/0.3334, allocations: 8.788 MB / 487.2 MB, free: 14.13 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 7.652e-05/0.3335, allocations: 192 / 487.2 MB, free: 14.13 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003557/0.3338, allocations: 264.4 kB / 487.5 MB, free: 13.89 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007838/0.3346, allocations: 0.847 MB / 488.3 MB, free: 13.04 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01184/0.3464, allocations: 10.15 MB / 498.5 MB, free: 2.859 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.03914/0.3856, allocations: 34.07 MB / 0.5201 GB, free: 0.9492 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.004568/0.3901, allocations: 3.082 MB / 0.5231 GB, free: 13.86 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.002916/0.3931, allocations: 2.156 MB / 0.5252 GB, free: 11.7 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.02127/0.4143, allocations: 21.08 MB / 0.5458 GB, free: 6.711 MB / 426.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.247e-05/0.4144, allocations: 72.38 kB / 0.5458 GB, free: 6.629 MB / 426.7 MB
Notification: Performance of pre-optimization done (n=440): time 4.429e-06/0.4144, allocations: 0 / 0.5458 GB, free: 6.629 MB / 426.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 2.3921543969772756]