Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001378/0.001378, allocations: 92.31 kB / 20.19 MB, free: 4.352 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00145/0.00145, allocations: 169 kB / 23.49 MB, free: 1.047 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9528/0.9528, allocations: 177.1 MB / 203.8 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08834/0.08834, allocations: 17.38 MB / 277.7 MB, free: 11.72 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics")
translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.EnzymeKinetics") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.673e-06/1.673e-06, allocations: 0 / 353.5 MB, free: 11.35 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.778e-05/2.946e-05, allocations: 2.312 kB / 353.5 MB, free: 11.35 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.EnzymeKinetics): time 0.03583/0.03586, allocations: 30.49 MB / 384 MB, free: 12.96 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02384/0.05969, allocations: 19.57 MB / 403.5 MB, free: 9.32 MB / 378.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001269/0.06096, allocations: 27.81 kB / 403.5 MB, free: 9.293 MB / 378.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.001057/0.06202, allocations: 376.9 kB / 403.9 MB, free: 8.922 MB / 378.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003508/0.06553, allocations: 1.725 MB / 405.6 MB, free: 7.184 MB / 378.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.004413/0.06994, allocations: 2.613 MB / 408.3 MB, free: 4.555 MB / 378.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001638/0.07158, allocations: 2.039 MB / 410.3 MB, free: 2.508 MB / 378.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000891/0.07247, allocations: 0.9632 MB / 411.3 MB, free: 1.527 MB / 378.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001034/0.0735, allocations: 1.381 MB / 412.6 MB, free: 148 kB / 378.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0009236/0.07443, allocations: 0.9471 MB / 413.6 MB, free: 15.2 MB / 394.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001899/0.07462, allocations: 176 kB / 413.8 MB, free: 15.02 MB / 394.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003535/0.07815, allocations: 2.066 MB / 415.8 MB, free: 12.95 MB / 394.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002626/0.07841, allocations: 446.6 kB / 416.3 MB, free: 12.52 MB / 394.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0004836/0.0789, allocations: 0.6393 MB / 416.9 MB, free: 11.88 MB / 394.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004227/0.08312, allocations: 3.895 MB / 420.8 MB, free: 7.965 MB / 394.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.609e-06/0.08313, allocations: 0 / 420.8 MB, free: 7.965 MB / 394.7 MB
Notification: Performance of FrontEnd: time 1.102e-06/0.08313, allocations: 0 / 420.8 MB, free: 7.965 MB / 394.7 MB
Notification: Performance of Transformations before backend: time 1.517e-05/0.08315, allocations: 0 / 420.8 MB, free: 7.965 MB / 394.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 337
 * Number of variables: 337
Notification: Performance of Generate backend data structure: time 0.00233/0.08548, allocations: 2.263 MB / 423.1 MB, free: 5.656 MB / 394.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.028e-05/0.08551, allocations: 8.031 kB / 423.1 MB, free: 5.648 MB / 394.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001053/0.08656, allocations: 0.5488 MB / 423.6 MB, free: 5.098 MB / 394.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008079/0.08737, allocations: 0.7711 MB / 424.4 MB, free: 4.297 MB / 394.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001147/0.08748, allocations: 206 kB / 424.6 MB, free: 4.07 MB / 394.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001539/0.08763, allocations: 140.3 kB / 424.7 MB, free: 3.934 MB / 394.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001478/0.08911, allocations: 1.369 MB / 426.1 MB, free: 2.516 MB / 394.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.965e-05/0.08913, allocations: 192 / 426.1 MB, free: 2.516 MB / 394.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.534e-05/0.08923, allocations: 56.12 kB / 426.1 MB, free: 2.461 MB / 394.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.979e-05/0.08925, allocations: 32 kB / 426.2 MB, free: 2.43 MB / 394.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001623/0.09087, allocations: 1.436 MB / 427.6 MB, free: 0.9844 MB / 394.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004394/0.09526, allocations: 4.208 MB / 431.8 MB, free: 12.69 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003117/0.09838, allocations: 3.047 MB / 434.9 MB, free: 9.629 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0006653/0.09905, allocations: 499.2 kB / 435.4 MB, free: 9.133 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.004132/0.1032, allocations: 3.585 MB / 438.9 MB, free: 5.52 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.59e-05/0.1032, allocations: 46.39 kB / 439 MB, free: 5.465 MB / 410.7 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0002669/0.1035, allocations: 147.1 kB / 439.1 MB, free: 5.32 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=97): time 1.793e-06/0.1035, allocations: 4 kB / 439.1 MB, free: 5.316 MB / 410.7 MB
Notification: Performance of matching and sorting (n=116): time 0.007579/0.1111, allocations: 3.508 MB / 442.6 MB, free: 1.766 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.8e-05/0.1111, allocations: 68.34 kB / 442.7 MB, free: 1.684 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005225/0.1116, allocations: 0.7333 MB / 443.4 MB, free: 0.9297 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.55e-05/0.1117, allocations: 49.69 kB / 443.5 MB, free: 0.875 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003049/0.112, allocations: 0.7134 MB / 444.2 MB, free: 156 kB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.1268/0.2388, allocations: 426.8 kB / 444.6 MB, free: 97.05 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003607/0.2392, allocations: 297.3 kB / 444.9 MB, free: 97.03 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 9.524e-05/0.2393, allocations: 0.5245 MB / 445.4 MB, free: 96.55 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005151/0.2398, allocations: 294.5 kB / 445.7 MB, free: 96.54 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.00069/0.2405, allocations: 1.002 MB / 446.7 MB, free: 95.64 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001304/0.2418, allocations: 1.413 MB / 448.1 MB, free: 94.75 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.208e-06/0.2418, allocations: 4.844 kB / 448.1 MB, free: 94.75 MB / 410.7 MB
Notification: Performance of matching and sorting (n=197) (initialization): time 0.003338/0.2451, allocations: 1.618 MB / 449.8 MB, free: 94.67 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.305e-05/0.2451, allocations: 16.66 kB / 449.8 MB, free: 94.66 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.603e-05/0.2452, allocations: 18.28 kB / 449.8 MB, free: 94.66 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.002057/0.2472, allocations: 463.2 kB / 450.2 MB, free: 94.63 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008484/0.2481, allocations: 373.7 kB / 450.6 MB, free: 94.63 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.002998/0.2511, allocations: 4.373 MB / 455 MB, free: 90.73 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006632/0.2517, allocations: 53.56 kB / 455 MB, free: 90.73 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001043/0.2518, allocations: 87.97 kB / 455.1 MB, free: 90.73 MB / 410.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 75
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (190):
 * Single equations (assignments): 187
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002775/0.2521, allocations: 259.2 kB / 455.4 MB, free: 90.57 MB / 410.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001935/0.2523, allocations: 145.8 kB / 455.5 MB, free: 90.51 MB / 410.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003129/0.2554, allocations: 1.414 MB / 456.9 MB, free: 90.39 MB / 410.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 7.925e-06/0.2554, allocations: 12.12 kB / 456.9 MB, free: 90.39 MB / 410.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.647e-06/0.2554, allocations: 3.188 kB / 456.9 MB, free: 90.39 MB / 410.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.046e-05/0.2554, allocations: 6.938 kB / 457 MB, free: 90.39 MB / 410.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000998/0.2564, allocations: 0.9187 MB / 457.9 MB, free: 90.16 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.893e-06/0.2564, allocations: 3.281 kB / 457.9 MB, free: 90.16 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006067/0.2571, allocations: 233.3 kB / 458.1 MB, free: 90.16 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001969/0.259, allocations: 446.1 kB / 458.5 MB, free: 90.12 MB / 410.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.464e-05/0.2591, allocations: 43.38 kB / 458.6 MB, free: 90.12 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002566/0.2617, allocations: 4.278 MB / 462.9 MB, free: 86.23 MB / 410.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.713e-06/0.2617, allocations: 0 / 462.9 MB, free: 86.23 MB / 410.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003295/0.265, allocations: 1.73 MB / 464.6 MB, free: 85.84 MB / 410.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002953/0.2653, allocations: 207.1 kB / 464.8 MB, free: 85.79 MB / 410.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001135/0.2654, allocations: 30.59 kB / 464.8 MB, free: 85.78 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000384/0.2658, allocations: 21.09 kB / 464.8 MB, free: 85.78 MB / 410.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002051/0.266, allocations: 119.8 kB / 465 MB, free: 85.78 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.847e-05/0.266, allocations: 53.19 kB / 465 MB, free: 85.78 MB / 410.7 MB
Notification: Performance of sorting global known variables: time 0.0003264/0.2664, allocations: 428.9 kB / 465.4 MB, free: 85.64 MB / 410.7 MB
Notification: Performance of sort global known variables: time 7e-08/0.2664, allocations: 0 / 465.4 MB, free: 85.64 MB / 410.7 MB
Notification: Performance of remove unused functions: time 0.00181/0.2682, allocations: 0.8411 MB / 466.3 MB, free: 85.64 MB / 410.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 6 (solution.temperature,P.logn,S.logn,ES.logn,E.logn,liquidWater.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (120):
 * Single equations (assignments): 117
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.00122/0.2694, allocations: 0.9814 MB / 467.3 MB, free: 85.55 MB / 410.7 MB
Notification: Performance of simCode: created initialization part: time 0.001584/0.271, allocations: 1.347 MB / 468.6 MB, free: 85.16 MB / 410.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.933e-06/0.271, allocations: 0 / 468.6 MB, free: 85.16 MB / 410.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0007866/0.2718, allocations: 0.8473 MB / 469.4 MB, free: 84.79 MB / 410.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008362/0.2726, allocations: 269.6 kB / 469.7 MB, free: 84.78 MB / 410.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003295/0.2759, allocations: 2.204 MB / 471.9 MB, free: 83.82 MB / 410.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001584/0.276, allocations: 241 kB / 472.2 MB, free: 83.73 MB / 410.7 MB
Notification: Performance of simCode: alias equations: time 0.0007094/0.2768, allocations: 285.3 kB / 472.4 MB, free: 83.71 MB / 410.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002958/0.2771, allocations: 181.7 kB / 472.6 MB, free: 83.7 MB / 410.7 MB
Notification: Performance of SimCode: time 5.61e-07/0.2771, allocations: 0 / 472.6 MB, free: 83.7 MB / 410.7 MB
Notification: Performance of Templates: time 0.02755/0.3046, allocations: 29.05 MB / 0.4899 GB, free: 77.92 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.sim & ./Chemical_Chemical.Obsolete.Examples.EnzymeKinetics -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.EnzymeKinetics.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.7807313229423016]