Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009313/0.0009313, allocations: 92.2 kB / 20.19 MB, free: 4.359 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001059/0.001059, allocations: 173 kB / 23.5 MB, free: 1.051 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9367/0.9367, allocations: 177.1 MB / 203.8 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09321/0.09321, allocations: 17.39 MB / 277.7 MB, free: 11.7 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.114e-06/2.114e-06, allocations: 0 / 353.5 MB, free: 10.3 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.593e-05/2.804e-05, allocations: 6.312 kB / 353.5 MB, free: 10.29 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02488/0.02491, allocations: 26.85 MB / 380.3 MB, free: 15.59 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005246/0.03015, allocations: 6.317 MB / 386.6 MB, free: 9.254 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002831/0.03043, allocations: 11.88 kB / 386.6 MB, free: 9.242 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00041/0.03085, allocations: 146.9 kB / 386.8 MB, free: 9.098 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005501/0.0314, allocations: 273.7 kB / 387.1 MB, free: 8.828 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001831/0.03323, allocations: 1.001 MB / 388.1 MB, free: 7.82 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005765/0.0338, allocations: 0.5291 MB / 388.6 MB, free: 7.289 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.000242/0.03404, allocations: 169.1 kB / 388.7 MB, free: 7.121 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002494/0.03429, allocations: 331.3 kB / 389.1 MB, free: 6.797 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002885/0.03458, allocations: 219.5 kB / 389.3 MB, free: 6.582 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.368e-05/0.03463, allocations: 32 kB / 389.3 MB, free: 6.551 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0009919/0.03562, allocations: 0.5263 MB / 389.8 MB, free: 6.023 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 9.831e-05/0.03572, allocations: 95.66 kB / 389.9 MB, free: 5.93 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001181/0.03583, allocations: 139.6 kB / 390.1 MB, free: 5.793 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.00127/0.0371, allocations: 1.035 MB / 391.1 MB, free: 4.754 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.437e-06/0.03711, allocations: 7.938 kB / 391.1 MB, free: 4.746 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.162e-06/0.03711, allocations: 0 / 391.1 MB, free: 4.746 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 6.051e-06/0.03712, allocations: 0 / 391.1 MB, free: 4.746 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0008305/0.03795, allocations: 0.8296 MB / 391.9 MB, free: 3.875 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.596e-05/0.03798, allocations: 12.03 kB / 392 MB, free: 3.863 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004137/0.0384, allocations: 175.7 kB / 392.1 MB, free: 3.691 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003716/0.03877, allocations: 356.2 kB / 392.5 MB, free: 3.316 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.824e-05/0.03878, allocations: 21.03 kB / 392.5 MB, free: 3.297 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.744e-05/0.03882, allocations: 24.38 kB / 392.5 MB, free: 3.273 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004194/0.03924, allocations: 392.3 kB / 392.9 MB, free: 2.844 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.288e-05/0.03925, allocations: 7.938 kB / 392.9 MB, free: 2.836 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.047e-05/0.03929, allocations: 15.94 kB / 392.9 MB, free: 2.82 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.237e-05/0.0393, allocations: 8 kB / 392.9 MB, free: 2.812 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0004725/0.03977, allocations: 422.5 kB / 393.3 MB, free: 2.395 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001421/0.04119, allocations: 2.016 MB / 395.4 MB, free: 304 kB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001869/0.04138, allocations: 98.95 kB / 395.5 MB, free: 192 kB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 7.921e-05/0.04146, allocations: 47.67 kB / 395.5 MB, free: 140 kB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001125/0.04258, allocations: 1.011 MB / 396.5 MB, free: 15.11 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.423e-05/0.04261, allocations: 41.39 kB / 396.6 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.743e-06/0.04261, allocations: 0 / 396.6 MB, free: 15.05 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0002619/0.04287, allocations: 129.4 kB / 396.7 MB, free: 14.92 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.367e-05/0.0429, allocations: 55.41 kB / 396.7 MB, free: 14.86 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002806/0.04318, allocations: 434.5 kB / 397.2 MB, free: 14.41 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.268e-05/0.0432, allocations: 25.7 kB / 397.2 MB, free: 14.38 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001469/0.04334, allocations: 326.3 kB / 397.5 MB, free: 14.06 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.26e-05/0.04337, allocations: 35.73 kB / 397.5 MB, free: 14.02 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.512e-05/0.04344, allocations: 83.27 kB / 397.6 MB, free: 13.93 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001412/0.04358, allocations: 0.5236 MB / 398.1 MB, free: 13.4 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.987e-05/0.04364, allocations: 39.91 kB / 398.2 MB, free: 13.36 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001931/0.04384, allocations: 341 kB / 398.5 MB, free: 12.88 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002904/0.04413, allocations: 424.5 kB / 398.9 MB, free: 12.32 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.096e-06/0.04413, allocations: 0 / 398.9 MB, free: 12.32 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0003495/0.04448, allocations: 333.2 kB / 399.3 MB, free: 11.98 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.763e-05/0.0445, allocations: 8 kB / 399.3 MB, free: 11.98 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.718e-06/0.04451, allocations: 8 kB / 399.3 MB, free: 11.97 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.977e-05/0.04453, allocations: 8 kB / 399.3 MB, free: 11.96 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000159/0.04469, allocations: 83.89 kB / 399.4 MB, free: 11.88 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.272e-05/0.0447, allocations: 15.94 kB / 399.4 MB, free: 11.86 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001207/0.04482, allocations: 40.23 kB / 399.4 MB, free: 11.82 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.901e-05/0.04485, allocations: 31.98 kB / 399.4 MB, free: 11.79 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001018/0.04495, allocations: 196.2 kB / 399.6 MB, free: 11.59 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.041e-05/0.04499, allocations: 35.77 kB / 399.7 MB, free: 11.55 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002876/0.04528, allocations: 242.2 kB / 399.9 MB, free: 11.28 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.947e-06/0.04528, allocations: 8.031 kB / 399.9 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.797e-06/0.04528, allocations: 3.938 kB / 399.9 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.326e-06/0.04529, allocations: 0 / 399.9 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003352/0.04562, allocations: 0.5431 MB / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.944e-06/0.04563, allocations: 0 / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.768e-06/0.04564, allocations: 0 / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.605e-06/0.04564, allocations: 0 / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.222e-06/0.04564, allocations: 0 / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.202e-06/0.04565, allocations: 0 / 400.5 MB, free: 10.68 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.092e-06/0.04565, allocations: 4 kB / 400.5 MB, free: 10.67 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 8.423e-05/0.04573, allocations: 112.1 kB / 400.6 MB, free: 10.54 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.837e-05/0.04576, allocations: 27.81 kB / 400.6 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.85e-05/0.04579, allocations: 7.891 kB / 400.6 MB, free: 10.5 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.846e-05/0.04583, allocations: 3.984 kB / 400.6 MB, free: 10.5 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.343e-05/0.04584, allocations: 4 kB / 400.6 MB, free: 10.5 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.354e-06/0.04584, allocations: 3.938 kB / 400.6 MB, free: 10.49 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0001904/0.04603, allocations: 303 kB / 400.9 MB, free: 10.2 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.51e-07/0.04603, allocations: 0 / 400.9 MB, free: 10.2 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0003931/0.04643, allocations: 183.3 kB / 401.1 MB, free: 10.02 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.000407/0.04683, allocations: 310.6 kB / 401.4 MB, free: 9.699 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001839/0.04702, allocations: 129.8 kB / 401.5 MB, free: 9.57 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.054e-06/0.04702, allocations: 3.938 kB / 401.5 MB, free: 9.566 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 8.086e-06/0.04703, allocations: 11.62 kB / 401.5 MB, free: 9.551 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003101/0.04734, allocations: 105 kB / 401.7 MB, free: 9.457 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001024/0.04836, allocations: 0.5219 MB / 402.2 MB, free: 8.906 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 5.129e-05/0.04841, allocations: 92.55 kB / 402.3 MB, free: 8.797 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001749/0.04859, allocations: 91.02 kB / 402.4 MB, free: 8.707 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 5.737e-05/0.04864, allocations: 40.48 kB / 402.4 MB, free: 8.668 MB / 330.7 MB
Notification: Performance of SimCode: time 1.182e-06/0.04865, allocations: 0 / 402.4 MB, free: 8.668 MB / 330.7 MB
Notification: Performance of Templates: time 0.007524/0.05617, allocations: 6.177 MB / 408.6 MB, free: 2.559 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.957623958121985]