Environment - simulationEnvironment: startTime=0 stopTime=1.1 tolerance=1e-14 numberOfIntervals=2500 stepSize=0.00044 Regular simulation: ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Develop.Hemoglobin_titration_shifts -abortSlowSimulation -alarm=240 -lv LOG_STATS LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[1].state, has value: -3.38789e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -3.38789e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[2].state, has value: -3.38789e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -3.38789e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[3].state, has value: -3.38789e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -3.38789e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[4].state, has value: -3.38789e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -3.38789e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration4.deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration4.deoxyhemoglobin.R.oxygenation, has value: -1.35515e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[1].state, has value: -2.75296e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -2.75296e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[2].state, has value: -2.75296e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -2.75296e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[3].state, has value: -2.75296e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -2.75296e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[4].state, has value: -2.75296e-24" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -2.75296e-21" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration2.deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration2.deoxyhemoglobin.R.oxygenation, has value: -1.10118e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[1].state, has value: -7.27014e-26" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[1].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[1].q_out.conc, has value: -7.27014e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[2].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[2].state, has value: -7.27014e-26" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[2].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[2].q_out.conc, has value: -7.27014e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[3].state, has value: -7.27014e-26" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[3].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[3].q_out.conc, has value: -7.27014e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[4].state, has value: -7.27014e-26" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.OxyHm[4].q_out.conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.OxyHm[4].q_out.conc, has value: -7.27014e-23" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.carboxylation[3].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.carboxylation[3].products[1].conc, has value: -2.35569e-22" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.NHCOO[3].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.NHCOO[3].state, has value: -2.35569e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:1834:11-1841:36:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.R.oxygenation >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.R.oxygenation, has value: -2.90806e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.T.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.T.carboxylation[1].products[1].conc, has value: -2.9095e-22" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.T.carboxylation[4].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.T.carboxylation[4].products[1].conc, has value: -1.65104e-22" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.T.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.T.NHCOO[1].state, has value: -2.9095e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration.deoxyhemoglobin.T.NHCOO[4].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration.deoxyhemoglobin.T.NHCOO[4].state, has value: -1.65104e-25" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Chemical.mo:4814:7-4814:54:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration5.deoxyhemoglobin.T.carboxylation[1].products[1].conc >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration5.deoxyhemoglobin.T.carboxylation[1].products[1].conc, has value: -1.0842e-16" LOG_ASSERT | warning | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/SteadyStates.mo:1145:7-1148:37:writable] | | | | The following assertion has been violated at time 0.000000 | | | | ((hemoglobin_titration5.deoxyhemoglobin.T.NHCOO[1].state >= 0.0)) --> "Variable violating min constraint: 0.0 <= hemoglobin_titration5.deoxyhemoglobin.T.NHCOO[1].state, has value: -1.0842e-19" LOG_SUCCESS | info | The initialization finished successfully without homotopy method. DASKR-- AT T (=R1) TOO MUCH ACCURACY REQUESTED In above message, R1 = 0.0000000000000E+00 DASKR-- FOR PRECISION OF MACHINE. RTOL AND ATOL DASKR-- WERE INCREASED BY A FACTOR R (=R1) In above message, R1 = 1.1102230246252E+00 LOG_STDOUT | warning | The error tolerances are too stringent LOG_STDOUT | warning | can't continue. time = 0.000000 LOG_STDOUT | info | model terminate | Integrator failed. | Simulation terminated at time 0 LOG_STATS | info | ### STATISTICS ### | | | | | timer | | | | | | 0s reading init.xml | | | | | | 0s reading info.xml | | | | | | 5.2409e-05s [ 0.6%] pre-initialization | | | | | | 0.00713725s [ 82.5%] initialization | | | | | | 0s [ 0.0%] steps | | | | | | 2.1791e-05s [ 0.3%] solver (excl. callbacks) | | | | | | 2.4225e-05s [ 0.3%] creating output-file | | | | | | 0.000288614s [ 3.3%] event-handling | | | | | | 0s [ 0.0%] overhead | | | | | | 0.0011298s [ 13.1%] simulation | | | | | | 0.00865408s [100.0%] total | | | | | events | | | | | | 0 state events | | | | | | 0 time events | | | | | solver: dassl | | | | | | 0 steps taken | | | | | | 0 calls of functionODE | | | | | | 0 evaluations of jacobian | | | | | | 0 error test failures | | | | | | 0 convergence test failures | | | | | | 0s time of jacobian evaluation