Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001054/0.001054, allocations: 80.81 kB / 20.8 MB, free: 3.656 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001086/0.001086, allocations: 165 kB / 24.22 MB, free: 244 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.948/0.948, allocations: 177.2 MB / 204.7 MB, free: 5.449 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.05614/0.05614, allocations: 12.76 MB / 273.9 MB, free: 124 kB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.663e-06/1.663e-06, allocations: 0 / 294.9 MB, free: 11.89 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.436e-05/1.602e-05, allocations: 2.312 kB / 294.9 MB, free: 11.88 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.004972/0.004988, allocations: 5.8 MB / 300.7 MB, free: 7.984 MB / 266.7 MB
Notification: Performance of NFInst.instExpressions: time 0.006734/0.01172, allocations: 5.791 MB / 306.5 MB, free: 4.312 MB / 266.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0004025/0.01212, allocations: 43.94 kB / 306.5 MB, free: 4.285 MB / 266.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003032/0.01243, allocations: 184.8 kB / 306.7 MB, free: 4.117 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001936/0.01436, allocations: 0.995 MB / 307.7 MB, free: 3.375 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.00175/0.01611, allocations: 0.9906 MB / 308.7 MB, free: 2.672 MB / 266.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001912/0.01803, allocations: 3.243 MB / 311.9 MB, free: 15.94 MB / 282.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0007118/0.01874, allocations: 0.5941 MB / 312.5 MB, free: 15.3 MB / 282.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001723/0.02046, allocations: 1.645 MB / 314.2 MB, free: 13.66 MB / 282.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001777/0.02224, allocations: 1.488 MB / 315.7 MB, free: 12.16 MB / 282.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0005226/0.02276, allocations: 168 kB / 315.8 MB, free: 12 MB / 282.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0004345/0.0232, allocations: 184 kB / 316 MB, free: 11.82 MB / 282.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004205/0.02362, allocations: 0.6772 MB / 316.7 MB, free: 11.14 MB / 282.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0008959/0.02451, allocations: 0.8725 MB / 317.6 MB, free: 10.27 MB / 282.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.002062/0.02657, allocations: 2.542 MB / 320.1 MB, free: 7.715 MB / 282.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.186e-06/0.02658, allocations: 0 / 320.1 MB, free: 7.715 MB / 282.7 MB
Notification: Performance of FrontEnd: time 1.753e-06/0.02658, allocations: 4 kB / 320.1 MB, free: 7.711 MB / 282.7 MB
Notification: Performance of Transformations before backend: time 7.906e-05/0.02666, allocations: 0 / 320.1 MB, free: 7.711 MB / 282.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.003154/0.02981, allocations: 2.854 MB / 323 MB, free: 4.812 MB / 282.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.389e-05/0.02985, allocations: 15.98 kB / 323 MB, free: 4.797 MB / 282.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006362/0.03048, allocations: 360.6 kB / 323.3 MB, free: 4.445 MB / 282.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001522/0.032, allocations: 1.417 MB / 324.8 MB, free: 2.961 MB / 282.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.257e-05/0.03208, allocations: 127.4 kB / 324.9 MB, free: 2.836 MB / 282.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001537/0.03223, allocations: 160.4 kB / 325 MB, free: 2.68 MB / 282.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0011/0.03333, allocations: 1.177 MB / 326.2 MB, free: 1.445 MB / 282.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.691e-05/0.03336, allocations: 11.88 kB / 326.2 MB, free: 1.434 MB / 282.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.569e-05/0.03344, allocations: 60 kB / 326.3 MB, free: 1.375 MB / 282.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.117e-05/0.03349, allocations: 62.97 kB / 326.3 MB, free: 1.312 MB / 282.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006588/0.03415, allocations: 0.5123 MB / 326.9 MB, free: 0.7891 MB / 282.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004677/0.03883, allocations: 4.185 MB / 331 MB, free: 12.46 MB / 298.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0006533/0.03948, allocations: 0.707 MB / 331.7 MB, free: 11.68 MB / 298.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002578/0.03974, allocations: 247.5 kB / 332 MB, free: 11.41 MB / 298.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.625e-05/0.0398, allocations: 25 kB / 332 MB, free: 11.39 MB / 298.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.112e-05/0.03983, allocations: 59.44 kB / 332.1 MB, free: 11.32 MB / 298.7 MB
Notification: Performance of pre-optimization done (n=118): time 2.335e-06/0.03983, allocations: 0 / 332.1 MB, free: 11.32 MB / 298.7 MB
Notification: Performance of matching and sorting (n=118): time 0.004407/0.04424, allocations: 2.046 MB / 334.1 MB, free: 9.262 MB / 298.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.169e-05/0.04432, allocations: 252.3 kB / 334.4 MB, free: 8.961 MB / 298.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001012/0.04533, allocations: 1.57 MB / 335.9 MB, free: 7.363 MB / 298.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.835e-05/0.04539, allocations: 53.7 kB / 336 MB, free: 7.305 MB / 298.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003391/0.04573, allocations: 0.7814 MB / 336.8 MB, free: 6.512 MB / 298.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002225/0.04595, allocations: 436.2 kB / 337.2 MB, free: 6.082 MB / 298.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002962/0.04625, allocations: 327.2 kB / 337.5 MB, free: 5.758 MB / 298.7 MB
Notification: Performance of setup shared object (initialization): time 6.435e-05/0.04631, allocations: 309 kB / 337.8 MB, free: 5.453 MB / 298.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002652/0.04658, allocations: 206.8 kB / 338 MB, free: 5.25 MB / 298.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004949/0.04707, allocations: 0.7669 MB / 338.8 MB, free: 4.211 MB / 298.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008717/0.04794, allocations: 1.15 MB / 339.9 MB, free: 2.785 MB / 298.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.528e-06/0.04795, allocations: 8 kB / 339.9 MB, free: 2.777 MB / 298.7 MB
Notification: Performance of matching and sorting (n=226) (initialization): time 0.002555/0.05051, allocations: 1.546 MB / 341.5 MB, free: 1.215 MB / 298.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.142e-05/0.05053, allocations: 16 kB / 341.5 MB, free: 1.199 MB / 298.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.662e-05/0.05055, allocations: 24.12 kB / 341.5 MB, free: 1.176 MB / 298.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003067/0.05361, allocations: 1.249 MB / 342.8 MB, free: 15.92 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001057/0.05467, allocations: 442 kB / 343.2 MB, free: 15.5 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.006022/0.06069, allocations: 3.795 MB / 347 MB, free: 11.63 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00134/0.06203, allocations: 206.6 kB / 347.2 MB, free: 11.43 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 8.863e-05/0.06212, allocations: 64 kB / 347.3 MB, free: 11.37 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (183):
 * Single equations (assignments): 182
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004606/0.06258, allocations: 228 kB / 347.5 MB, free: 11.13 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002902/0.06287, allocations: 159.8 kB / 347.6 MB, free: 10.98 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002399/0.06311, allocations: 270.2 kB / 347.9 MB, free: 10.71 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.746e-06/0.06312, allocations: 15.94 kB / 347.9 MB, free: 10.7 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 7.404e-06/0.06313, allocations: 4 kB / 347.9 MB, free: 10.69 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.476e-06/0.06314, allocations: 7.969 kB / 347.9 MB, free: 10.68 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004438/0.06757, allocations: 2.9 MB / 350.8 MB, free: 7.594 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.167e-05/0.06759, allocations: 12 kB / 350.8 MB, free: 7.582 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003523/0.06794, allocations: 183.7 kB / 351 MB, free: 7.402 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.002963/0.0709, allocations: 1.224 MB / 352.3 MB, free: 6.172 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 6.419e-05/0.07096, allocations: 43.94 kB / 352.3 MB, free: 6.129 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.004525/0.07549, allocations: 3.456 MB / 355.8 MB, free: 2.566 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 8.726e-06/0.0755, allocations: 19.94 kB / 355.8 MB, free: 2.547 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002845/0.07834, allocations: 2.295 MB / 358.1 MB, free: 84 kB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.000605/0.07895, allocations: 304.7 kB / 358.4 MB, free: 15.78 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001361/0.07908, allocations: 47.92 kB / 358.4 MB, free: 15.73 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005553/0.07964, allocations: 47.94 kB / 358.5 MB, free: 15.69 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002367/0.07988, allocations: 148.1 kB / 358.6 MB, free: 15.54 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.432e-05/0.07992, allocations: 40 kB / 358.6 MB, free: 15.5 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0006661/0.08059, allocations: 0.7948 MB / 359.4 MB, free: 14.69 MB / 330.7 MB
Notification: Performance of sort global known variables: time 8.1e-08/0.08059, allocations: 0 / 359.4 MB, free: 14.69 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001666/0.08225, allocations: 0.7766 MB / 360.2 MB, free: 13.91 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 55
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (89):
 * Single equations (assignments): 88
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 1
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 0 systems
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001741/0.08243, allocations: 130.4 kB / 360.3 MB, free: 13.78 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.002028/0.08445, allocations: 1.293 MB / 361.6 MB, free: 12.48 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 3.503e-05/0.08449, allocations: 25.94 kB / 361.7 MB, free: 12.46 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.001004/0.08549, allocations: 0.7686 MB / 362.4 MB, free: 11.67 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001681/0.08717, allocations: 0.4923 MB / 362.9 MB, free: 11.19 MB / 330.7 MB
Error: Error parsing unit kcal: Unit not found
Error: Error parsing unit kcal/min: Unit not found
Error: Error parsing unit kcal/mol: Unit not found
Error: Error parsing unit %: Parse error
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005941/0.09312, allocations: 4.146 MB / 367.1 MB, free: 6.828 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0005446/0.09366, allocations: 0.5654 MB / 367.6 MB, free: 6.238 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0006954/0.09436, allocations: 218.2 kB / 367.8 MB, free: 6.02 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006693/0.09502, allocations: 419.1 kB / 368.3 MB, free: 5.602 MB / 330.7 MB
Notification: Performance of SimCode: time 2.144e-06/0.09503, allocations: 3.938 kB / 368.3 MB, free: 5.598 MB / 330.7 MB
Notification: Performance of Templates: time 0.06303/0.1581, allocations: 46.73 MB / 415 MB, free: 7.32 MB / 378.7 MB
"
[Timeout remaining time 660]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=240  -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling os._exit(0), Time elapsed: 4.0578090865164995]