Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001025/0.001025, allocations: 69.98 kB / 20.65 MB, free: 3.848 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001394/0.001394, allocations: 173 kB / 24.06 MB, free: 452 kB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.026/1.026, allocations: 177.1 MB / 204.5 MB, free: 5.102 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.619/1.619, allocations: 273.5 MB / 0.522 GB, free: 14.65 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.523e-06/1.523e-06, allocations: 0 / 0.6482 GB, free: 38.43 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.481e-05/2.633e-05, allocations: 2.312 kB / 0.6482 GB, free: 38.42 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.01063/0.01065, allocations: 11.55 MB / 0.6595 GB, free: 30.74 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.008209/0.01886, allocations: 2.474 MB / 0.6619 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.002734/0.0216, allocations: 27 kB / 0.662 GB, free: 29.01 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.001126/0.02272, allocations: 296.6 kB / 0.6622 GB, free: 28.84 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.003244/0.02597, allocations: 0.7809 MB / 0.663 GB, free: 28.27 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.00152/0.02749, allocations: 0.6028 MB / 0.6636 GB, free: 27.91 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002638/0.03012, allocations: 2.871 MB / 0.6664 GB, free: 26.37 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.002282/0.0324, allocations: 3.222 MB / 0.6695 GB, free: 24.45 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002032/0.03444, allocations: 2.564 MB / 0.6721 GB, free: 23.38 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.00246/0.0369, allocations: 1.978 MB / 0.674 GB, free: 22.85 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0004209/0.03732, allocations: 423.2 kB / 0.6744 GB, free: 22.85 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0004808/0.0378, allocations: 425.1 kB / 0.6748 GB, free: 22.85 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.000592/0.03839, allocations: 0.9278 MB / 0.6757 GB, free: 22.25 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.001095/0.03949, allocations: 1.295 MB / 0.677 GB, free: 21.64 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.002275/0.04176, allocations: 2.589 MB / 0.6795 GB, free: 20.38 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 5.651e-06/0.04177, allocations: 0 / 0.6795 GB, free: 20.38 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.102e-06/0.04177, allocations: 0 / 0.6795 GB, free: 20.38 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.152e-05/0.04179, allocations: 4 kB / 0.6795 GB, free: 20.37 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 449 * Number of variables: 449 Notification: Performance of Generate backend data structure: time 0.00379/0.04558, allocations: 2.908 MB / 0.6823 GB, free: 18.2 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.471e-05/0.04561, allocations: 9.781 kB / 0.6823 GB, free: 18.2 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005797/0.04619, allocations: 378.6 kB / 0.6827 GB, free: 18.02 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.00104/0.04723, allocations: 1.07 MB / 0.6838 GB, free: 17.14 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.257e-05/0.04733, allocations: 133.9 kB / 0.6839 GB, free: 17.09 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003132/0.04764, allocations: 208.1 kB / 0.6841 GB, free: 17.01 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003929/0.05157, allocations: 2.81 MB / 0.6868 GB, free: 15.2 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 8.153e-05/0.05165, allocations: 16.58 kB / 0.6868 GB, free: 15.18 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003193/0.05197, allocations: 74.16 kB / 0.6869 GB, free: 15.13 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.674e-05/0.05202, allocations: 45.66 kB / 0.687 GB, free: 15.12 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003258/0.05527, allocations: 1.682 MB / 0.6886 GB, free: 14.54 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008668/0.06394, allocations: 6.956 MB / 0.6954 GB, free: 8.527 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001082/0.06502, allocations: 0.976 MB / 0.6963 GB, free: 7.523 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0007002/0.06572, allocations: 0.6445 MB / 0.697 GB, free: 6.852 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.83e-05/0.06578, allocations: 41.98 kB / 0.697 GB, free: 6.812 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001111/0.06689, allocations: 1.491 MB / 0.6985 GB, free: 5.227 MB / 0.5262 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.003679/0.07057, allocations: 1.86 MB / 0.7003 GB, free: 3.41 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 4.439e-06/0.07058, allocations: 0 / 0.7003 GB, free: 3.41 MB / 0.5262 GB Notification: Performance of matching and sorting (n=202): time 0.006428/0.077, allocations: 4.817 MB / 0.705 GB, free: 14.46 MB / 0.5418 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001361/0.07714, allocations: 409.8 kB / 0.7054 GB, free: 13.97 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005647/0.0777, allocations: 0.8418 MB / 0.7062 GB, free: 13.11 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001821/0.07789, allocations: 69.7 kB / 0.7063 GB, free: 13.03 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003673/0.07825, allocations: 0.7545 MB / 0.707 GB, free: 12.27 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0004739/0.07873, allocations: 0.7242 MB / 0.7077 GB, free: 11.54 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006922/0.07942, allocations: 0.6031 MB / 0.7083 GB, free: 10.92 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 0.0002525/0.07967, allocations: 480.7 kB / 0.7088 GB, free: 10.45 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009277/0.0806, allocations: 0.8745 MB / 0.7096 GB, free: 9.516 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.00121/0.08181, allocations: 1.538 MB / 0.7111 GB, free: 7.629 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003054/0.08486, allocations: 3.061 MB / 0.7141 GB, free: 4.203 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.514e-06/0.08487, allocations: 7.938 kB / 0.7141 GB, free: 4.199 MB / 0.5418 GB Notification: Performance of matching and sorting (n=298) (initialization): time 0.003376/0.08825, allocations: 2.806 MB / 0.7169 GB, free: 1.273 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001053/0.08835, allocations: 272.2 kB / 0.7171 GB, free: 0.9531 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.434e-05/0.08837, allocations: 12 kB / 0.7171 GB, free: 0.9414 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.357e-05/0.08839, allocations: 24 kB / 0.7171 GB, free: 0.918 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001847/0.09024, allocations: 0.8305 MB / 0.718 GB, free: 88 kB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.157e-05/0.09026, allocations: 35.86 kB / 0.718 GB, free: 52 kB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001047/0.09131, allocations: 96.03 kB / 0.7181 GB, free: 15.95 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002114/0.09152, allocations: 195.7 kB / 0.7183 GB, free: 15.76 MB / 0.5574 GB Warning: Assuming fixed start value for the following 42 variables: venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean lumenCompartment.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 55 * Number of states: 0 () * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (289): * Single equations (assignments): 280 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0007538/0.09227, allocations: 0.5755 MB / 0.7188 GB, free: 15.18 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004457/0.09272, allocations: 219.1 kB / 0.719 GB, free: 14.96 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003149/0.09587, allocations: 2.544 MB / 0.7215 GB, free: 12.44 MB / 0.5574 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.478e-06/0.09588, allocations: 16 kB / 0.7215 GB, free: 12.42 MB / 0.5574 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.405e-06/0.09588, allocations: 0 / 0.7215 GB, free: 12.42 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.628e-05/0.0959, allocations: 15.52 kB / 0.7216 GB, free: 12.41 MB / 0.5574 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.004301/0.1002, allocations: 3.324 MB / 0.7248 GB, free: 8.996 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.268e-06/0.1002, allocations: 0 / 0.7248 GB, free: 8.996 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001352/0.1016, allocations: 435.3 kB / 0.7252 GB, free: 8.57 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (simulation): time 9.217e-06/0.1016, allocations: 8 kB / 0.7252 GB, free: 8.562 MB / 0.5574 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001513/0.1017, allocations: 107.8 kB / 0.7253 GB, free: 8.457 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.684e-06/0.1017, allocations: 8 kB / 0.7253 GB, free: 8.449 MB / 0.5574 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.744e-06/0.1017, allocations: 0 / 0.7253 GB, free: 8.449 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003355/0.1051, allocations: 2.832 MB / 0.7281 GB, free: 5.516 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005642/0.1056, allocations: 386.6 kB / 0.7285 GB, free: 5.137 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002521/0.1059, allocations: 71.88 kB / 0.7285 GB, free: 5.066 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007906/0.1067, allocations: 63.95 kB / 0.7286 GB, free: 5.004 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002272/0.1069, allocations: 165.7 kB / 0.7288 GB, free: 4.84 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001386/0.107, allocations: 103.8 kB / 0.7289 GB, free: 4.738 MB / 0.5574 GB Notification: Performance of sorting global known variables: time 0.0003529/0.1074, allocations: 0.541 MB / 0.7294 GB, free: 4.188 MB / 0.5574 GB Notification: Performance of sort global known variables: time 8e-08/0.1074, allocations: 0 / 0.7294 GB, free: 4.188 MB / 0.5574 GB Notification: Performance of remove unused functions: time 0.001363/0.1088, allocations: 0.6367 MB / 0.73 GB, free: 3.551 MB / 0.5574 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count) * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (190): * Single equations (assignments): 176 * Array equations: 0 * Algorithm blocks: 4 * Record equations: 0 * When equations: 10 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002766/0.109, allocations: 203.4 kB / 0.7302 GB, free: 3.352 MB / 0.5574 GB Notification: Performance of simCode: created initialization part: time 0.002302/0.1113, allocations: 2.477 MB / 0.7326 GB, free: 0.6797 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 3.607e-06/0.1113, allocations: 4 kB / 0.7326 GB, free: 0.6758 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.001018/0.1124, allocations: 1.106 MB / 0.7337 GB, free: 15.5 MB / 0.573 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001369/0.1137, allocations: 0.5738 MB / 0.7343 GB, free: 14.95 MB / 0.573 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005928/0.1197, allocations: 5.069 MB / 0.7392 GB, free: 9.977 MB / 0.573 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000212/0.1199, allocations: 329.7 kB / 0.7395 GB, free: 9.629 MB / 0.573 GB Notification: Performance of simCode: alias equations: time 0.001275/0.1211, allocations: 0.4946 MB / 0.74 GB, free: 9.262 MB / 0.573 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001795/0.1229, allocations: 0.7825 MB / 0.7408 GB, free: 8.477 MB / 0.573 GB Notification: Performance of SimCode: time 8.82e-07/0.1229, allocations: 0 / 0.7408 GB, free: 8.477 MB / 0.573 GB Notification: Performance of Templates: time 0.04476/0.1677, allocations: 45.09 MB / 0.7848 GB, free: 12.3 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.980128297116607]