Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001132/0.001132, allocations: 73.88 kB / 20.65 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009984/0.0009984, allocations: 169 kB / 24.06 MB, free: 452 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9929/0.9929, allocations: 177.1 MB / 204.5 MB, free: 5.492 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.626/1.626, allocations: 273.5 MB / 0.522 GB, free: 14.8 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment")
translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.142e-06/1.142e-06, allocations: 0 / 0.6482 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.369e-05/1.483e-05, allocations: 2.312 kB / 0.6482 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.004642/0.004657, allocations: 6.583 MB / 0.6546 GB, free: 34.16 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001984/0.006641, allocations: 1.998 MB / 0.6566 GB, free: 32.79 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002487/0.00689, allocations: 19.53 kB / 0.6566 GB, free: 32.79 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0005167/0.007406, allocations: 285.2 kB / 0.6568 GB, free: 32.64 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004582/0.007864, allocations: 463.6 kB / 0.6573 GB, free: 32.32 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0006226/0.008487, allocations: 0.5376 MB / 0.6578 GB, free: 31.98 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001341/0.009828, allocations: 1.797 MB / 0.6596 GB, free: 30.98 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003162/0.01014, allocations: 262.1 kB / 0.6598 GB, free: 30.83 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0006153/0.01076, allocations: 0.9148 MB / 0.6607 GB, free: 30.39 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000473/0.01123, allocations: 0.5286 MB / 0.6612 GB, free: 30.19 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0001674/0.0114, allocations: 169.6 kB / 0.6614 GB, free: 30.19 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.000327/0.01173, allocations: 316.9 kB / 0.6617 GB, free: 30.13 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0001926/0.01192, allocations: 366 kB / 0.662 GB, free: 29.9 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.000374/0.01229, allocations: 0.5197 MB / 0.6625 GB, free: 29.64 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0009633/0.01326, allocations: 1.383 MB / 0.6639 GB, free: 28.9 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.457e-06/0.01326, allocations: 0 / 0.6639 GB, free: 28.9 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.012e-06/0.01326, allocations: 0 / 0.6639 GB, free: 28.9 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.284e-05/0.01327, allocations: 0 / 0.6639 GB, free: 28.9 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 233
 * Number of variables: 233
Notification: Performance of Generate backend data structure: time 0.00169/0.01496, allocations: 2.347 MB / 0.6662 GB, free: 27.04 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.369e-05/0.015, allocations: 8.562 kB / 0.6662 GB, free: 27.04 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006752/0.01567, allocations: 0.5179 MB / 0.6667 GB, free: 26.83 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005258/0.0162, allocations: 0.6558 MB / 0.6673 GB, free: 26.34 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.226e-05/0.01624, allocations: 67.47 kB / 0.6674 GB, free: 26.31 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001173/0.01636, allocations: 113.4 kB / 0.6675 GB, free: 26.27 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008794/0.01724, allocations: 1.209 MB / 0.6687 GB, free: 25.48 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.222e-05/0.01727, allocations: 20.47 kB / 0.6687 GB, free: 25.46 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.705e-05/0.01733, allocations: 40.5 kB / 0.6688 GB, free: 25.44 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.478e-05/0.01734, allocations: 21.09 kB / 0.6688 GB, free: 25.44 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000578/0.01792, allocations: 0.8645 MB / 0.6696 GB, free: 24.88 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00196/0.01988, allocations: 2.424 MB / 0.672 GB, free: 23.27 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0007753/0.02065, allocations: 1.085 MB / 0.673 GB, free: 22.46 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003694/0.02102, allocations: 0.7142 MB / 0.6737 GB, free: 21.84 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 4.701e-05/0.02107, allocations: 26.45 kB / 0.6738 GB, free: 21.84 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008298/0.0219, allocations: 1.578 MB / 0.6753 GB, free: 20.55 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=157): time 2.875e-06/0.0219, allocations: 1.656 kB / 0.6753 GB, free: 20.55 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=165): time 0.004811/0.02671, allocations: 5.256 MB / 0.6804 GB, free: 16.64 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003462/0.02706, allocations: 1.036 MB / 0.6815 GB, free: 15.43 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000919/0.02798, allocations: 0.9086 MB / 0.6823 GB, free: 14.99 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 8.604e-05/0.02807, allocations: 78.38 kB / 0.6824 GB, free: 14.93 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0003763/0.02844, allocations: 0.5849 MB / 0.683 GB, free: 14.46 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0003284/0.02877, allocations: 0.5362 MB / 0.6835 GB, free: 14.03 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003631/0.02913, allocations: 298.8 kB / 0.6838 GB, free: 13.89 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 7.168e-05/0.02921, allocations: 482.3 kB / 0.6843 GB, free: 13.42 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005486/0.02975, allocations: 0.8423 MB / 0.6851 GB, free: 12.7 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007107/0.03046, allocations: 1.339 MB / 0.6864 GB, free: 11.32 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001381/0.03185, allocations: 2.757 MB / 0.6891 GB, free: 8.715 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.761e-06/0.03185, allocations: 3.406 kB / 0.6891 GB, free: 8.715 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=229) (initialization): time 0.001961/0.03381, allocations: 2.574 MB / 0.6916 GB, free: 6.949 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0001557/0.03397, allocations: 0.5691 MB / 0.6921 GB, free: 6.301 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.625e-05/0.03398, allocations: 8.781 kB / 0.6922 GB, free: 6.301 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.756e-05/0.03401, allocations: 17.34 kB / 0.6922 GB, free: 6.301 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0007102/0.03472, allocations: 335.3 kB / 0.6925 GB, free: 6.27 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.054e-05/0.03474, allocations: 22.19 kB / 0.6925 GB, free: 6.266 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000439/0.03518, allocations: 80.02 kB / 0.6926 GB, free: 6.238 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003202/0.0355, allocations: 239.5 kB / 0.6928 GB, free: 6.215 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 40 variables:
         patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         patient4.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 41
 * Number of states: 0 ()
 * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (209):
 * Single equations (assignments): 189
 * Array equations: 0
 * Algorithm blocks: 20
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0006944/0.0362, allocations: 0.924 MB / 0.6937 GB, free: 5.379 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004699/0.03667, allocations: 446.7 kB / 0.6941 GB, free: 5.211 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001415/0.03681, allocations: 133 kB / 0.6943 GB, free: 5.125 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.458e-06/0.03682, allocations: 12.97 kB / 0.6943 GB, free: 5.125 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.095e-05/0.03684, allocations: 3.359 kB / 0.6943 GB, free: 5.125 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.417e-05/0.03685, allocations: 7.906 kB / 0.6943 GB, free: 5.125 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.003091/0.03994, allocations: 3.59 MB / 0.6978 GB, free: 2.715 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.458e-06/0.03995, allocations: 6.328 kB / 0.6978 GB, free: 2.711 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006548/0.0406, allocations: 236.6 kB / 0.698 GB, free: 2.688 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 9.268e-06/0.04061, allocations: 5.281 kB / 0.698 GB, free: 2.688 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.866e-05/0.04071, allocations: 62.36 kB / 0.6981 GB, free: 2.664 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.095e-06/0.04072, allocations: 6.219 kB / 0.6981 GB, free: 2.664 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.397e-06/0.04072, allocations: 5.531 kB / 0.6981 GB, free: 2.664 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002591/0.04331, allocations: 3.767 MB / 0.7018 GB, free: 14.73 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003736/0.04369, allocations: 290.9 kB / 0.7021 GB, free: 14.44 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001684/0.04385, allocations: 71.98 kB / 0.7021 GB, free: 14.37 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003694/0.04422, allocations: 59.97 kB / 0.7022 GB, free: 14.31 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002176/0.04444, allocations: 147.8 kB / 0.7023 GB, free: 14.17 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001896/0.04463, allocations: 233.1 kB / 0.7026 GB, free: 13.94 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0004356/0.04507, allocations: 0.5007 MB / 0.703 GB, free: 13.43 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 6e-08/0.04507, allocations: 0 / 0.703 GB, free: 13.43 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.0008782/0.04594, allocations: 384 kB / 0.7034 GB, free: 13.05 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc)
 * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status)
 * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (133):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 16
 * Record equations: 0
 * When equations: 8
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003572/0.0463, allocations: 282.9 kB / 0.7037 GB, free: 12.78 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.001725/0.04803, allocations: 2.969 MB / 0.7066 GB, free: 9.348 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 3.938e-06/0.04803, allocations: 4 kB / 0.7066 GB, free: 9.344 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 0.001152/0.04918, allocations: 1.809 MB / 0.7084 GB, free: 7.234 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001092/0.05027, allocations: 399.1 kB / 0.7087 GB, free: 6.875 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004356/0.05463, allocations: 3.828 MB / 0.7125 GB, free: 2.988 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002563/0.05489, allocations: 310.5 kB / 0.7128 GB, free: 2.66 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 0.0003562/0.05524, allocations: 115.3 kB / 0.7129 GB, free: 2.551 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007529/0.056, allocations: 0.5018 MB / 0.7134 GB, free: 2.047 MB / 0.5418 GB
Notification: Performance of SimCode: time 7.92e-07/0.056, allocations: 0 / 0.7134 GB, free: 2.047 MB / 0.5418 GB
Notification: Performance of Templates: time 0.02727/0.08327, allocations: 25.94 MB / 0.7387 GB, free: 9.379 MB / 0.573 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.796324071940035]