Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009045/0.0009045, allocations: 77.86 kB / 20.66 MB, free: 3.832 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001419/0.001419, allocations: 165 kB / 24.06 MB, free: 448 kB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9403/0.9403, allocations: 177.1 MB / 204.5 MB, free: 5.508 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.573/1.573, allocations: 273.5 MB / 0.522 GB, free: 14.74 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.362e-06/1.362e-06, allocations: 0 / 0.6482 GB, free: 38.49 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.051e-05/2.187e-05, allocations: 2.312 kB / 0.6482 GB, free: 38.48 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.004845/0.004867, allocations: 6.766 MB / 0.6548 GB, free: 33.97 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001919/0.006786, allocations: 1.292 MB / 0.656 GB, free: 33.07 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003037/0.00709, allocations: 9.812 kB / 0.656 GB, free: 33.07 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0001964/0.007286, allocations: 115.3 kB / 0.6561 GB, free: 33 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0004739/0.00776, allocations: 338.2 kB / 0.6565 GB, free: 32.75 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0004737/0.008234, allocations: 289.7 kB / 0.6567 GB, free: 32.56 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0009783/0.009212, allocations: 1.22 MB / 0.6579 GB, free: 31.87 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002914/0.009503, allocations: 180.4 kB / 0.6581 GB, free: 31.75 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0007215/0.01022, allocations: 0.6208 MB / 0.6587 GB, free: 31.47 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004731/0.0107, allocations: 361.4 kB / 0.6591 GB, free: 31.34 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001236/0.01082, allocations: 110.1 kB / 0.6592 GB, free: 31.34 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001385/0.01096, allocations: 110 kB / 0.6593 GB, free: 31.34 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 8.871e-05/0.01105, allocations: 197 kB / 0.6595 GB, free: 31.2 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003156/0.01136, allocations: 359.5 kB / 0.6598 GB, free: 31.04 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0005861/0.01195, allocations: 0.7201 MB / 0.6605 GB, free: 30.64 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.214e-06/0.01195, allocations: 1.438 kB / 0.6605 GB, free: 30.64 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.82e-07/0.01195, allocations: 0 / 0.6605 GB, free: 30.64 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.477e-05/0.01197, allocations: 0 / 0.6605 GB, free: 30.64 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001289/0.01326, allocations: 1.423 MB / 0.6619 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.049e-05/0.01329, allocations: 8.375 kB / 0.6619 GB, free: 29.52 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001714/0.01346, allocations: 139.1 kB / 0.662 GB, free: 29.46 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003985/0.01386, allocations: 439.5 kB / 0.6625 GB, free: 29.12 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.867e-05/0.01389, allocations: 43.53 kB / 0.6625 GB, free: 29.1 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.066e-05/0.01397, allocations: 77.08 kB / 0.6626 GB, free: 29.07 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005584/0.01453, allocations: 0.6565 MB / 0.6632 GB, free: 28.66 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.731e-05/0.01455, allocations: 6.766 kB / 0.6632 GB, free: 28.66 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.702e-05/0.01459, allocations: 23 kB / 0.6632 GB, free: 28.64 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.083e-05/0.0146, allocations: 17.94 kB / 0.6633 GB, free: 28.64 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003626/0.01496, allocations: 441.6 kB / 0.6637 GB, free: 28.42 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001405/0.01637, allocations: 1.868 MB / 0.6655 GB, free: 27.02 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0005255/0.01689, allocations: 0.5454 MB / 0.666 GB, free: 26.66 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001875/0.01708, allocations: 311.6 kB / 0.6663 GB, free: 26.42 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 3.246e-05/0.01711, allocations: 21.83 kB / 0.6663 GB, free: 26.42 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004669/0.01758, allocations: 0.9337 MB / 0.6673 GB, free: 25.68 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 1.843e-06/0.01758, allocations: 0 / 0.6673 GB, free: 25.68 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002088/0.01967, allocations: 2.577 MB / 0.6698 GB, free: 23.89 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001004/0.01977, allocations: 0.5965 MB / 0.6704 GB, free: 23.18 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003049/0.02008, allocations: 0.5023 MB / 0.6709 GB, free: 22.91 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.307e-05/0.02013, allocations: 59.83 kB / 0.6709 GB, free: 22.86 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001321/0.02026, allocations: 358.8 kB / 0.6713 GB, free: 22.56 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001539/0.02041, allocations: 357.5 kB / 0.6716 GB, free: 22.28 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001886/0.0206, allocations: 194.3 kB / 0.6718 GB, free: 22.18 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001016/0.0207, allocations: 0.5795 MB / 0.6723 GB, free: 21.64 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002514/0.02096, allocations: 423.9 kB / 0.6727 GB, free: 21.31 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003166/0.02127, allocations: 0.8372 MB / 0.6736 GB, free: 20.42 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0007409/0.02201, allocations: 1.467 MB / 0.675 GB, free: 19.04 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.234e-05/0.02203, allocations: 2.906 kB / 0.675 GB, free: 19.04 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.0009795/0.02301, allocations: 1.314 MB / 0.6763 GB, free: 18.19 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.392e-05/0.02307, allocations: 261.5 kB / 0.6765 GB, free: 17.9 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.222e-05/0.02308, allocations: 8.188 kB / 0.6765 GB, free: 17.9 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.927e-05/0.0231, allocations: 13.28 kB / 0.6766 GB, free: 17.9 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004956/0.0236, allocations: 255.1 kB / 0.6768 GB, free: 17.88 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.459e-05/0.02361, allocations: 18.03 kB / 0.6768 GB, free: 17.87 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003323/0.02394, allocations: 56.91 kB / 0.6769 GB, free: 17.85 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.115e-05/0.02399, allocations: 41.81 kB / 0.6769 GB, free: 17.84 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003844/0.02438, allocations: 0.554 MB / 0.6774 GB, free: 17.37 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001302/0.02451, allocations: 134.2 kB / 0.6776 GB, free: 17.31 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.521e-05/0.02459, allocations: 80.67 kB / 0.6777 GB, free: 17.25 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.171e-06/0.0246, allocations: 9.906 kB / 0.6777 GB, free: 17.25 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.291e-05/0.02461, allocations: 3.938 kB / 0.6777 GB, free: 17.25 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.032e-05/0.02462, allocations: 6.094 kB / 0.6777 GB, free: 17.25 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001597/0.02622, allocations: 2.026 MB / 0.6797 GB, free: 15.93 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.276e-06/0.02622, allocations: 1.438 kB / 0.6797 GB, free: 15.93 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004441/0.02667, allocations: 162.7 kB / 0.6798 GB, free: 15.91 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.843e-06/0.02667, allocations: 4.844 kB / 0.6798 GB, free: 15.91 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.455e-05/0.02673, allocations: 40.69 kB / 0.6799 GB, free: 15.89 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.997e-06/0.02673, allocations: 2.938 kB / 0.6799 GB, free: 15.89 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.645e-06/0.02674, allocations: 2.219 kB / 0.6799 GB, free: 15.89 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001275/0.02801, allocations: 1.853 MB / 0.6817 GB, free: 14.65 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002314/0.02824, allocations: 165.1 kB / 0.6818 GB, free: 14.55 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000111/0.02835, allocations: 49.17 kB / 0.6819 GB, free: 14.52 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002765/0.02863, allocations: 42.91 kB / 0.6819 GB, free: 14.51 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001603/0.02879, allocations: 106.7 kB / 0.682 GB, free: 14.48 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.683e-05/0.02884, allocations: 34.81 kB / 0.682 GB, free: 14.47 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002026/0.02904, allocations: 320 kB / 0.6823 GB, free: 14.31 MB / 0.5262 GB Notification: Performance of sort global known variables: time 8e-08/0.02904, allocations: 0 / 0.6823 GB, free: 14.31 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0005792/0.02962, allocations: 246.2 kB / 0.6826 GB, free: 14.29 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001693/0.02979, allocations: 190.2 kB / 0.6828 GB, free: 14.15 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0008153/0.0306, allocations: 1.434 MB / 0.6842 GB, free: 13.01 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 2.515e-06/0.03061, allocations: 0 / 0.6842 GB, free: 13.01 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0004219/0.03103, allocations: 0.7929 MB / 0.6849 GB, free: 12.36 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008885/0.03192, allocations: 277.5 kB / 0.6852 GB, free: 12.29 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003074/0.03499, allocations: 2.286 MB / 0.6874 GB, free: 10.8 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001513/0.03514, allocations: 174.8 kB / 0.6876 GB, free: 10.72 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0003614/0.0355, allocations: 94.7 kB / 0.6877 GB, free: 10.7 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005807/0.03608, allocations: 378.1 kB / 0.6881 GB, free: 10.61 MB / 0.5262 GB Notification: Performance of SimCode: time 6.31e-07/0.03608, allocations: 1.094 kB / 0.6881 GB, free: 10.61 MB / 0.5262 GB Notification: Performance of Templates: time 0.0167/0.05278, allocations: 15.77 MB / 0.7035 GB, free: 15.38 MB / 0.5418 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.1046630521304905]