Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001128/0.001128, allocations: 73.09 kB / 20.66 MB, free: 3.844 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001196/0.001196, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9942/0.9942, allocations: 177.1 MB / 204.5 MB, free: 5.512 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.649/1.649, allocations: 273.5 MB / 0.522 GB, free: 14.67 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.424e-06/2.424e-06, allocations: 1.422 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 3.018e-05/3.26e-05, allocations: 2.312 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.01067/0.0107, allocations: 10.89 MB / 0.6588 GB, free: 31.25 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.006084/0.01679, allocations: 2.255 MB / 0.661 GB, free: 29.63 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.002081/0.01887, allocations: 18.03 kB / 0.661 GB, free: 29.63 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0008404/0.01971, allocations: 229.7 kB / 0.6612 GB, free: 29.49 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.002711/0.02242, allocations: 0.6886 MB / 0.6619 GB, free: 28.98 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.001819/0.02424, allocations: 0.6317 MB / 0.6625 GB, free: 28.52 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.003261/0.0275, allocations: 2.672 MB / 0.6651 GB, free: 26.96 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0006103/0.02811, allocations: 365 kB / 0.6655 GB, free: 26.72 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.00182/0.02993, allocations: 1.365 MB / 0.6668 GB, free: 26.02 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.000893/0.03082, allocations: 0.7347 MB / 0.6675 GB, free: 25.74 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002832/0.03111, allocations: 280.2 kB / 0.6678 GB, free: 25.74 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003397/0.03145, allocations: 280.7 kB / 0.6681 GB, free: 25.74 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002372/0.03168, allocations: 452.4 kB / 0.6685 GB, free: 25.39 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0007004/0.03238, allocations: 0.7607 MB / 0.6692 GB, free: 25 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001272/0.03366, allocations: 1.592 MB / 0.6708 GB, free: 24.06 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 7.935e-06/0.03366, allocations: 4.906 kB / 0.6708 GB, free: 24.06 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.653e-06/0.03367, allocations: 0 / 0.6708 GB, free: 24.06 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.666e-05/0.03368, allocations: 0 / 0.6708 GB, free: 24.06 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002275/0.03596, allocations: 2.561 MB / 0.6733 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.65e-05/0.03599, allocations: 10 kB / 0.6733 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002861/0.03628, allocations: 282.5 kB / 0.6736 GB, free: 22 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007039/0.03698, allocations: 0.8199 MB / 0.6744 GB, free: 21.39 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.432e-05/0.03704, allocations: 91.3 kB / 0.6745 GB, free: 21.35 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001524/0.03719, allocations: 149.3 kB / 0.6746 GB, free: 21.3 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001172/0.03836, allocations: 1.27 MB / 0.6759 GB, free: 20.5 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.57e-05/0.03841, allocations: 21.75 kB / 0.6759 GB, free: 20.49 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 7.014e-05/0.03848, allocations: 47.55 kB / 0.6759 GB, free: 20.46 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.911e-05/0.0385, allocations: 26.84 kB / 0.6759 GB, free: 20.46 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0007539/0.03925, allocations: 0.8613 MB / 0.6768 GB, free: 20 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003177/0.04243, allocations: 4.062 MB / 0.6808 GB, free: 17 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0009956/0.04342, allocations: 1.078 MB / 0.6818 GB, free: 16.29 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003849/0.04381, allocations: 0.6344 MB / 0.6824 GB, free: 15.78 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.698e-05/0.04387, allocations: 31.81 kB / 0.6825 GB, free: 15.78 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001147/0.04501, allocations: 1.883 MB / 0.6843 GB, free: 14.34 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.347e-06/0.04502, allocations: 0 / 0.6843 GB, free: 14.34 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.004581/0.0496, allocations: 5.176 MB / 0.6893 GB, free: 10.74 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001995/0.0498, allocations: 1.174 MB / 0.6905 GB, free: 9.363 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007912/0.05059, allocations: 0.8619 MB / 0.6913 GB, free: 8.977 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 9.921e-05/0.05069, allocations: 102.4 kB / 0.6914 GB, free: 8.902 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0002877/0.05098, allocations: 0.5775 MB / 0.692 GB, free: 8.426 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0003632/0.05134, allocations: 0.6932 MB / 0.6927 GB, free: 7.867 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004721/0.05181, allocations: 386.3 kB / 0.693 GB, free: 7.684 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 5.819e-05/0.05187, allocations: 485.6 kB / 0.6935 GB, free: 7.207 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000621/0.05249, allocations: 0.8306 MB / 0.6943 GB, free: 6.535 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000712/0.0532, allocations: 1.666 MB / 0.6959 GB, free: 4.652 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001659/0.05486, allocations: 2.942 MB / 0.6988 GB, free: 1.781 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.575e-05/0.05488, allocations: 3.562 kB / 0.6988 GB, free: 1.781 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.002197/0.05708, allocations: 2.589 MB / 0.7013 GB, free: 15.59 MB / 0.5418 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002007/0.05728, allocations: 0.5064 MB / 0.7018 GB, free: 14.97 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.884e-05/0.05729, allocations: 16 kB / 0.7019 GB, free: 14.96 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.749e-05/0.05732, allocations: 31.94 kB / 0.7019 GB, free: 14.93 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009817/0.0583, allocations: 0.5036 MB / 0.7024 GB, free: 14.42 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.486e-05/0.05833, allocations: 39.86 kB / 0.7024 GB, free: 14.38 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009366/0.05927, allocations: 111.9 kB / 0.7025 GB, free: 14.27 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001016/0.05937, allocations: 80 kB / 0.7026 GB, free: 14.2 MB / 0.5418 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001093/0.06046, allocations: 0.9992 MB / 0.7036 GB, free: 13.16 MB / 0.5418 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003035/0.06076, allocations: 255 kB / 0.7038 GB, free: 12.91 MB / 0.5418 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001824/0.06095, allocations: 161.6 kB / 0.704 GB, free: 12.75 MB / 0.5418 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.406e-05/0.06096, allocations: 23.47 kB / 0.704 GB, free: 12.73 MB / 0.5418 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.798e-05/0.06099, allocations: 0 / 0.704 GB, free: 12.73 MB / 0.5418 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.33e-05/0.061, allocations: 7.969 kB / 0.704 GB, free: 12.72 MB / 0.5418 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00385/0.06485, allocations: 4.21 MB / 0.7081 GB, free: 8.324 MB / 0.5418 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.751e-06/0.06486, allocations: 4 kB / 0.7081 GB, free: 8.32 MB / 0.5418 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008729/0.06573, allocations: 323.6 kB / 0.7084 GB, free: 8.004 MB / 0.5418 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.016e-05/0.06574, allocations: 8 kB / 0.7084 GB, free: 7.996 MB / 0.5418 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001161/0.06586, allocations: 83.89 kB / 0.7085 GB, free: 7.914 MB / 0.5418 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.478e-06/0.06587, allocations: 11.88 kB / 0.7085 GB, free: 7.906 MB / 0.5418 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.457e-06/0.06587, allocations: 0 / 0.7085 GB, free: 7.906 MB / 0.5418 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002898/0.06877, allocations: 3.672 MB / 0.7121 GB, free: 3.992 MB / 0.5418 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0006346/0.0694, allocations: 382.8 kB / 0.7125 GB, free: 3.617 MB / 0.5418 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002381/0.06964, allocations: 111.9 kB / 0.7126 GB, free: 3.508 MB / 0.5418 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005357/0.07018, allocations: 79.95 kB / 0.7127 GB, free: 3.43 MB / 0.5418 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002784/0.07045, allocations: 207.6 kB / 0.7129 GB, free: 3.227 MB / 0.5418 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.371e-05/0.07053, allocations: 63.95 kB / 0.7129 GB, free: 3.164 MB / 0.5418 GB Notification: Performance of sorting global known variables: time 0.0003892/0.07092, allocations: 0.5059 MB / 0.7134 GB, free: 2.648 MB / 0.5418 GB Notification: Performance of sort global known variables: time 1.51e-07/0.07092, allocations: 0 / 0.7134 GB, free: 2.648 MB / 0.5418 GB Notification: Performance of remove unused functions: time 0.001338/0.07226, allocations: 496 kB / 0.7139 GB, free: 2.164 MB / 0.5418 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002932/0.07255, allocations: 304.7 kB / 0.7142 GB, free: 1.855 MB / 0.5418 GB Notification: Performance of simCode: created initialization part: time 0.002129/0.07468, allocations: 2.884 MB / 0.717 GB, free: 14.57 MB / 0.5574 GB Notification: Performance of simCode: created event and clocks part: time 4.057e-06/0.07468, allocations: 4 kB / 0.717 GB, free: 14.57 MB / 0.5574 GB Notification: Performance of simCode: created simulation system equations: time 0.0009581/0.07564, allocations: 1.589 MB / 0.7186 GB, free: 12.75 MB / 0.5574 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001588/0.07723, allocations: 0.5693 MB / 0.7191 GB, free: 12.24 MB / 0.5574 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005149/0.08238, allocations: 4.443 MB / 0.7234 GB, free: 7.793 MB / 0.5574 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002386/0.08262, allocations: 296.5 kB / 0.7237 GB, free: 7.48 MB / 0.5574 GB Notification: Performance of simCode: alias equations: time 0.0007719/0.08339, allocations: 183.2 kB / 0.7239 GB, free: 7.305 MB / 0.5574 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001088/0.08448, allocations: 0.6775 MB / 0.7246 GB, free: 6.625 MB / 0.5574 GB Notification: Performance of SimCode: time 2.595e-06/0.08448, allocations: 3.938 kB / 0.7246 GB, free: 6.621 MB / 0.5574 GB Notification: Performance of Templates: time 0.03718/0.1217, allocations: 33.87 MB / 0.7576 GB, free: 6.262 MB / 0.5887 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.607841871213168]