Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001001/0.001001, allocations: 77.09 kB / 20.66 MB, free: 3.844 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009876/0.0009876, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9651/0.9651, allocations: 177.1 MB / 204.5 MB, free: 5.508 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.633/1.633, allocations: 273.5 MB / 0.522 GB, free: 14.75 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.343e-06/1.343e-06, allocations: 0 / 0.6484 GB, free: 38.29 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.088e-05/1.222e-05, allocations: 3.938 kB / 0.6484 GB, free: 38.28 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.00356/0.003573, allocations: 5.626 MB / 0.6539 GB, free: 34.58 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.001276/0.004848, allocations: 1.31 MB / 0.6551 GB, free: 33.67 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001856/0.005034, allocations: 11.25 kB / 0.6552 GB, free: 33.67 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0001836/0.005218, allocations: 125.1 kB / 0.6553 GB, free: 33.6 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0003717/0.005589, allocations: 369.4 kB / 0.6556 GB, free: 33.33 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0002913/0.005881, allocations: 259.7 kB / 0.6559 GB, free: 33.16 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.0007513/0.006632, allocations: 1.283 MB / 0.6571 GB, free: 32.44 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002627/0.006895, allocations: 207.2 kB / 0.6573 GB, free: 32.32 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0006669/0.007562, allocations: 0.6562 MB / 0.658 GB, free: 32.04 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0005287/0.00809, allocations: 391.4 kB / 0.6583 GB, free: 31.91 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0001036/0.008194, allocations: 108.1 kB / 0.6584 GB, free: 31.91 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000111/0.008305, allocations: 107.1 kB / 0.6585 GB, free: 31.91 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 8.767e-05/0.008393, allocations: 202 kB / 0.6587 GB, free: 31.76 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0002617/0.008654, allocations: 388.4 kB / 0.6591 GB, free: 31.59 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.0004874/0.009142, allocations: 0.7381 MB / 0.6598 GB, free: 31.21 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 2.324e-06/0.009144, allocations: 0 / 0.6598 GB, free: 31.21 MB / 0.5262 GB Notification: Performance of FrontEnd: time 6.01e-07/0.009144, allocations: 0 / 0.6598 GB, free: 31.21 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 7.344e-06/0.009152, allocations: 1.438 kB / 0.6598 GB, free: 31.21 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001132/0.01028, allocations: 1.484 MB / 0.6613 GB, free: 30.05 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.227e-05/0.01032, allocations: 10.47 kB / 0.6613 GB, free: 30.05 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001485/0.01046, allocations: 156.8 kB / 0.6614 GB, free: 29.98 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003289/0.01079, allocations: 438.5 kB / 0.6619 GB, free: 29.65 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.187e-05/0.01084, allocations: 56.08 kB / 0.6619 GB, free: 29.63 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.696e-05/0.01091, allocations: 82.72 kB / 0.662 GB, free: 29.6 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005421/0.01145, allocations: 0.6788 MB / 0.6627 GB, free: 29.21 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.464e-05/0.01148, allocations: 19.69 kB / 0.6627 GB, free: 29.2 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.506e-05/0.01151, allocations: 28.44 kB / 0.6627 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.268e-05/0.01153, allocations: 15.38 kB / 0.6627 GB, free: 29.18 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003541/0.01188, allocations: 454.9 kB / 0.6631 GB, free: 28.95 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001542/0.01342, allocations: 1.887 MB / 0.665 GB, free: 27.7 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0003402/0.01376, allocations: 466.3 kB / 0.6654 GB, free: 27.42 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001817/0.01394, allocations: 320.4 kB / 0.6657 GB, free: 27.2 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 2.326e-05/0.01397, allocations: 13.41 kB / 0.6658 GB, free: 27.2 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0004579/0.01443, allocations: 0.8636 MB / 0.6666 GB, free: 26.51 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 2.184e-06/0.01443, allocations: 0 / 0.6666 GB, free: 26.51 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.001917/0.01634, allocations: 2.404 MB / 0.6689 GB, free: 24.98 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001022/0.01645, allocations: 0.5461 MB / 0.6695 GB, free: 24.34 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002912/0.01674, allocations: 0.4996 MB / 0.67 GB, free: 24.06 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 4.562e-05/0.01678, allocations: 55.8 kB / 0.67 GB, free: 24.02 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001408/0.01692, allocations: 376.7 kB / 0.6704 GB, free: 23.7 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001473/0.01707, allocations: 354.6 kB / 0.6707 GB, free: 23.43 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001674/0.01724, allocations: 194.3 kB / 0.6709 GB, free: 23.32 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 0.0001004/0.01734, allocations: 0.5751 MB / 0.6715 GB, free: 22.79 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002217/0.01756, allocations: 431.4 kB / 0.6719 GB, free: 22.46 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003066/0.01787, allocations: 0.7967 MB / 0.6727 GB, free: 21.62 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0006828/0.01855, allocations: 1.455 MB / 0.6741 GB, free: 20.27 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.659e-06/0.01855, allocations: 3.312 kB / 0.6741 GB, free: 20.27 MB / 0.5262 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.0008423/0.0194, allocations: 1.291 MB / 0.6753 GB, free: 19.44 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.713e-05/0.01946, allocations: 264.7 kB / 0.6756 GB, free: 19.15 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.029e-05/0.01947, allocations: 6.594 kB / 0.6756 GB, free: 19.15 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 1.671e-05/0.01949, allocations: 13.19 kB / 0.6756 GB, free: 19.15 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00047/0.01996, allocations: 247.8 kB / 0.6758 GB, free: 19.12 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.137e-05/0.01997, allocations: 16.62 kB / 0.6759 GB, free: 19.12 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002736/0.02025, allocations: 58.14 kB / 0.6759 GB, free: 19.1 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.466e-05/0.02029, allocations: 37.33 kB / 0.6759 GB, free: 19.09 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003613/0.02065, allocations: 0.5638 MB / 0.6765 GB, free: 18.62 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001134/0.02077, allocations: 124.5 kB / 0.6766 GB, free: 18.57 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 8.367e-05/0.02085, allocations: 81.45 kB / 0.6767 GB, free: 18.51 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.412e-06/0.02086, allocations: 9.906 kB / 0.6767 GB, free: 18.51 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 7.855e-06/0.02086, allocations: 0.5625 kB / 0.6767 GB, free: 18.51 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.154e-05/0.02088, allocations: 4.312 kB / 0.6767 GB, free: 18.51 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001389/0.02226, allocations: 1.76 MB / 0.6784 GB, free: 17.46 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.475e-06/0.02227, allocations: 1.375 kB / 0.6784 GB, free: 17.46 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004011/0.02267, allocations: 162.4 kB / 0.6786 GB, free: 17.44 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 4.569e-06/0.02267, allocations: 5.062 kB / 0.6786 GB, free: 17.44 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.078e-05/0.02271, allocations: 34.92 kB / 0.6786 GB, free: 17.43 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.557e-06/0.02272, allocations: 7.625 kB / 0.6786 GB, free: 17.42 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.002e-06/0.02272, allocations: 0 / 0.6786 GB, free: 17.42 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00103/0.02375, allocations: 1.618 MB / 0.6802 GB, free: 16.42 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 6.658e-05/0.02381, allocations: 78.06 kB / 0.6803 GB, free: 16.36 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 9.131e-05/0.0239, allocations: 40.59 kB / 0.6803 GB, free: 16.34 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002118/0.02412, allocations: 46.72 kB / 0.6804 GB, free: 16.33 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001246/0.02424, allocations: 85.55 kB / 0.6805 GB, free: 16.31 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.548e-05/0.02428, allocations: 34.61 kB / 0.6805 GB, free: 16.3 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001818/0.02446, allocations: 319.6 kB / 0.6808 GB, free: 16.14 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.02446, allocations: 0 / 0.6808 GB, free: 16.14 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0004064/0.02487, allocations: 256.6 kB / 0.681 GB, free: 16.11 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001377/0.025, allocations: 186.6 kB / 0.6812 GB, free: 15.98 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0007039/0.02571, allocations: 1.429 MB / 0.6826 GB, free: 14.84 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.633e-06/0.02571, allocations: 1.594 kB / 0.6826 GB, free: 14.84 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0003396/0.02605, allocations: 0.7925 MB / 0.6834 GB, free: 14.2 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006572/0.02671, allocations: 258.5 kB / 0.6836 GB, free: 14.13 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002588/0.02929, allocations: 2.34 MB / 0.6859 GB, free: 12.65 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001069/0.0294, allocations: 173.5 kB / 0.6861 GB, free: 12.57 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0002225/0.02962, allocations: 88.2 kB / 0.6862 GB, free: 12.56 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0004809/0.0301, allocations: 365.2 kB / 0.6865 GB, free: 12.48 MB / 0.5262 GB Notification: Performance of SimCode: time 6.61e-07/0.0301, allocations: 4 kB / 0.6865 GB, free: 12.48 MB / 0.5262 GB Notification: Performance of Templates: time 0.01453/0.04464, allocations: 15.02 MB / 0.7012 GB, free: 1.996 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.0647510453127325]