Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.000929/0.000929, allocations: 73.09 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001142/0.001142, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.021/1.021, allocations: 177.1 MB / 204.5 MB, free: 5.504 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.696/1.696, allocations: 273.5 MB / 0.522 GB, free: 14.67 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.354e-06/2.354e-06, allocations: 0 / 0.6482 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.464e-05/2.699e-05, allocations: 7.641 kB / 0.6482 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001763/0.00179, allocations: 1.286 MB / 0.6494 GB, free: 37.69 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001954/0.001986, allocations: 52.83 kB / 0.6495 GB, free: 37.66 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.731e-05/0.002023, allocations: 0 / 0.6495 GB, free: 37.66 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 9.218e-05/0.002115, allocations: 6.672 kB / 0.6495 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.327e-05/0.002158, allocations: 3.688 kB / 0.6495 GB, free: 37.65 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001791/0.002337, allocations: 22.16 kB / 0.6495 GB, free: 37.64 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001642/0.002502, allocations: 146.3 kB / 0.6496 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.894e-05/0.002551, allocations: 5.188 kB / 0.6496 GB, free: 37.61 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001267/0.002677, allocations: 72.16 kB / 0.6497 GB, free: 37.59 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001587/0.002836, allocations: 80.83 kB / 0.6498 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.895e-05/0.002865, allocations: 10.19 kB / 0.6498 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.684e-05/0.002882, allocations: 8.531 kB / 0.6498 GB, free: 37.57 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.087e-05/0.002923, allocations: 35.22 kB / 0.6498 GB, free: 37.56 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 4.383e-05/0.002967, allocations: 29.81 kB / 0.6499 GB, free: 37.55 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001266/0.003093, allocations: 94.3 kB / 0.65 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.685e-06/0.003096, allocations: 0 / 0.65 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 2.164e-06/0.003098, allocations: 2.125 kB / 0.65 GB, free: 37.52 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.23e-06/0.003103, allocations: 0 / 0.65 GB, free: 37.52 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0009418/0.004045, allocations: 0.598 MB / 0.6505 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.71e-05/0.004082, allocations: 9.031 kB / 0.6506 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.293e-05/0.004125, allocations: 13.81 kB / 0.6506 GB, free: 37.13 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001121/0.004237, allocations: 132.8 kB / 0.6507 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.014e-05/0.004247, allocations: 4.719 kB / 0.6507 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.457e-05/0.004262, allocations: 6.75 kB / 0.6507 GB, free: 36.98 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002747/0.004537, allocations: 152.5 kB / 0.6509 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 6.642e-06/0.004543, allocations: 192 / 0.6509 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.266e-05/0.004556, allocations: 4.375 kB / 0.6509 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.931e-06/0.004562, allocations: 2.75 kB / 0.6509 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 7.117e-05/0.004633, allocations: 27.86 kB / 0.6509 GB, free: 36.9 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002142/0.004847, allocations: 258.9 kB / 0.6511 GB, free: 36.63 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 7.1e-05/0.004918, allocations: 37.92 kB / 0.6512 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 6.158e-05/0.00498, allocations: 39.23 kB / 0.6512 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.69e-05/0.004997, allocations: 7.688 kB / 0.6512 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.716e-05/0.005014, allocations: 35.77 kB / 0.6513 GB, free: 36.54 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.263e-06/0.005015, allocations: 0 / 0.6513 GB, free: 36.54 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002525/0.005268, allocations: 100 kB / 0.6513 GB, free: 36.49 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.324e-05/0.005291, allocations: 52.97 kB / 0.6514 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.973e-05/0.005361, allocations: 175.7 kB / 0.6516 GB, free: 36.25 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.693e-05/0.005377, allocations: 29.7 kB / 0.6516 GB, free: 36.21 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.157e-05/0.005419, allocations: 133.6 kB / 0.6517 GB, free: 36.08 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.122e-05/0.00544, allocations: 40.97 kB / 0.6518 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.89e-05/0.005489, allocations: 39.95 kB / 0.6518 GB, free: 36.02 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 6.135e-05/0.005551, allocations: 0.4966 MB / 0.6523 GB, free: 35.52 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.435e-05/0.005595, allocations: 11.22 kB / 0.6523 GB, free: 35.52 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 4.893e-05/0.005644, allocations: 40.47 kB / 0.6523 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 9.481e-05/0.005739, allocations: 54.67 kB / 0.6524 GB, free: 35.45 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.245e-06/0.005741, allocations: 0 / 0.6524 GB, free: 35.45 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001561/0.005897, allocations: 82.77 kB / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.182e-05/0.005909, allocations: 3.625 kB / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.212e-06/0.005915, allocations: 5.656 kB / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 9.978e-06/0.005925, allocations: 6.094 kB / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002355/0.00616, allocations: 72.58 kB / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.747e-06/0.006164, allocations: 0 / 0.6525 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001529/0.006317, allocations: 62.27 kB / 0.6526 GB, free: 35.4 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.183e-05/0.006329, allocations: 2.375 kB / 0.6526 GB, free: 35.4 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 5.617e-05/0.006385, allocations: 162.3 kB / 0.6528 GB, free: 35.23 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.154e-05/0.006407, allocations: 16.8 kB / 0.6528 GB, free: 35.23 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002332/0.00664, allocations: 164.4 kB / 0.6529 GB, free: 35.14 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.647e-06/0.006643, allocations: 5.156 kB / 0.6529 GB, free: 35.14 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.334e-06/0.006646, allocations: 3.938 kB / 0.6529 GB, free: 35.14 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.297e-06/0.006649, allocations: 0 / 0.6529 GB, free: 35.14 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001003/0.006749, allocations: 139.3 kB / 0.6531 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.002e-06/0.00675, allocations: 0 / 0.6531 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002066/0.006957, allocations: 85.56 kB / 0.6532 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.665e-06/0.00696, allocations: 3.688 kB / 0.6532 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.061e-05/0.00697, allocations: 4 kB / 0.6532 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.753e-06/0.006972, allocations: 2.25 kB / 0.6532 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.362e-06/0.006973, allocations: 0 / 0.6532 GB, free: 35 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000181/0.007154, allocations: 171.5 kB / 0.6533 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.335e-05/0.007168, allocations: 15.11 kB / 0.6533 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.664e-05/0.007184, allocations: 7 kB / 0.6534 GB, free: 34.87 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001414/0.007326, allocations: 55.02 kB / 0.6534 GB, free: 34.87 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.577e-05/0.007382, allocations: 26.86 kB / 0.6534 GB, free: 34.86 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.011e-05/0.007392, allocations: 7.312 kB / 0.6534 GB, free: 34.86 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.458e-05/0.007416, allocations: 134.3 kB / 0.6536 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 5e-08/0.007416, allocations: 0 / 0.6536 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001434/0.00756, allocations: 29.12 kB / 0.6536 GB, free: 34.73 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.361e-05/0.007633, allocations: 98.94 kB / 0.6537 GB, free: 34.64 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001486/0.007782, allocations: 63.23 kB / 0.6537 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.834e-06/0.007784, allocations: 1.875 kB / 0.6537 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 7.319e-05/0.007857, allocations: 59.22 kB / 0.6538 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001656/0.008023, allocations: 18.06 kB / 0.6538 GB, free: 34.6 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.000498/0.008521, allocations: 243.9 kB / 0.6541 GB, free: 34.43 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.969e-05/0.00855, allocations: 69.48 kB / 0.6541 GB, free: 34.36 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 6.744e-05/0.008618, allocations: 20.03 kB / 0.6541 GB, free: 34.35 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001242/0.008742, allocations: 91.41 kB / 0.6542 GB, free: 34.28 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.042e-06/0.008743, allocations: 0 / 0.6542 GB, free: 34.28 MB / 0.5262 GB
Notification: Performance of Templates: time 0.005209/0.01395, allocations: 3.082 MB / 0.6572 GB, free: 34.02 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.9947749907150865]