Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001038/0.001038, allocations: 73.09 kB / 20.66 MB, free: 3.84 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001648/0.001648, allocations: 169 kB / 24.05 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.06/1.06, allocations: 177.1 MB / 204.5 MB, free: 5.516 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.769/1.769, allocations: 273.5 MB / 0.522 GB, free: 14.73 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.693e-06/1.693e-06, allocations: 0 / 0.6482 GB, free: 38.7 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.105e-05/2.274e-05, allocations: 2.312 kB / 0.6482 GB, free: 38.69 MB / 0.5262 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.09553/0.09556, allocations: 43.95 MB / 0.6911 GB, free: 14.21 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.004155/0.09971, allocations: 5.046 MB / 0.696 GB, free: 9.156 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001776/0.09989, allocations: 27.69 kB / 0.696 GB, free: 9.129 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001679/0.1001, allocations: 59.39 kB / 0.6961 GB, free: 9.07 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001735/0.1018, allocations: 0.7734 MB / 0.6968 GB, free: 8.293 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001223/0.103, allocations: 0.8439 MB / 0.6977 GB, free: 7.453 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003776/0.1034, allocations: 0.4975 MB / 0.6982 GB, free: 6.953 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002281/0.1036, allocations: 192.2 kB / 0.6983 GB, free: 6.766 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001729/0.1038, allocations: 251.3 kB / 0.6986 GB, free: 6.52 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001608/0.104, allocations: 143.5 kB / 0.6987 GB, free: 6.379 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.933e-05/0.104, allocations: 24 kB / 0.6987 GB, free: 6.355 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.132e-05/0.104, allocations: 32 kB / 0.6988 GB, free: 6.324 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 5.674e-05/0.1041, allocations: 75.67 kB / 0.6988 GB, free: 6.25 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 8.122e-05/0.1042, allocations: 131.6 kB / 0.699 GB, free: 6.121 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002746/0.1044, allocations: 334.7 kB / 0.6993 GB, free: 5.793 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 5.34e-06/0.1044, allocations: 0 / 0.6993 GB, free: 5.793 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.82e-07/0.1044, allocations: 0 / 0.6993 GB, free: 5.793 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.2e-06/0.1044, allocations: 0 / 0.6993 GB, free: 5.793 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.0005386/0.105, allocations: 0.7212 MB / 0.7 GB, free: 5.035 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.056e-05/0.105, allocations: 8.031 kB / 0.7 GB, free: 5.027 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.758e-05/0.1051, allocations: 68.66 kB / 0.7001 GB, free: 4.961 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003142/0.1054, allocations: 361.2 kB / 0.7004 GB, free: 4.578 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.251e-05/0.1054, allocations: 20.88 kB / 0.7004 GB, free: 4.559 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.984e-05/0.1054, allocations: 32.38 kB / 0.7005 GB, free: 4.527 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001727/0.1056, allocations: 153.3 kB / 0.7006 GB, free: 4.371 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.319e-05/0.1056, allocations: 7.875 kB / 0.7006 GB, free: 4.363 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.512e-05/0.1056, allocations: 16 kB / 0.7006 GB, free: 4.348 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.122e-06/0.1056, allocations: 11.42 kB / 0.7006 GB, free: 4.34 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 8.073e-05/0.1057, allocations: 67.44 kB / 0.7007 GB, free: 4.277 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006979/0.1064, allocations: 0.6344 MB / 0.7013 GB, free: 3.613 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001478/0.1066, allocations: 115 kB / 0.7014 GB, free: 3.488 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 4.78e-05/0.1066, allocations: 55.59 kB / 0.7015 GB, free: 3.43 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.881e-05/0.1066, allocations: 0 / 0.7015 GB, free: 3.43 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.397e-05/0.1066, allocations: 41.39 kB / 0.7015 GB, free: 3.379 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.192e-06/0.1066, allocations: 0 / 0.7015 GB, free: 3.379 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.0002107/0.1069, allocations: 176.1 kB / 0.7017 GB, free: 3.203 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.169e-05/0.1069, allocations: 51.41 kB / 0.7017 GB, free: 3.141 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001517/0.107, allocations: 382.4 kB / 0.7021 GB, free: 2.754 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.23e-05/0.107, allocations: 33.7 kB / 0.7021 GB, free: 2.715 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 8.179e-05/0.1071, allocations: 263.2 kB / 0.7024 GB, free: 2.449 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.918e-05/0.1072, allocations: 79.33 kB / 0.7025 GB, free: 2.371 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.487e-05/0.1072, allocations: 71.31 kB / 0.7025 GB, free: 2.293 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.943e-05/0.1073, allocations: 0.5195 MB / 0.703 GB, free: 1.762 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.996e-05/0.1073, allocations: 39.91 kB / 0.7031 GB, free: 1.723 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 7.478e-05/0.1074, allocations: 115 kB / 0.7032 GB, free: 1.582 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002882/0.1077, allocations: 220.9 kB / 0.7034 GB, free: 1.336 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.617e-06/0.1077, allocations: 0 / 0.7034 GB, free: 1.336 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.0002047/0.1079, allocations: 231.1 kB / 0.7036 GB, free: 1.105 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.415e-05/0.1079, allocations: 8 kB / 0.7036 GB, free: 1.098 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.002e-06/0.1079, allocations: 0 / 0.7036 GB, free: 1.098 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 9.728e-06/0.1079, allocations: 7.938 kB / 0.7036 GB, free: 1.09 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001569/0.1081, allocations: 67.91 kB / 0.7037 GB, free: 1.023 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.907e-06/0.1081, allocations: 4.188 kB / 0.7037 GB, free: 1.02 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 6.404e-05/0.1081, allocations: 31.78 kB / 0.7037 GB, free: 0.9883 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.668e-06/0.1081, allocations: 15.92 kB / 0.7038 GB, free: 0.9727 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.258e-05/0.1082, allocations: 180.4 kB / 0.7039 GB, free: 0.7852 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.38e-05/0.1083, allocations: 43.77 kB / 0.704 GB, free: 0.7422 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001513/0.1084, allocations: 147.6 kB / 0.7041 GB, free: 0.5938 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.178e-06/0.1084, allocations: 11.55 kB / 0.7041 GB, free: 0.5859 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.433e-06/0.1084, allocations: 0 / 0.7041 GB, free: 0.5859 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.908e-06/0.1084, allocations: 0 / 0.7041 GB, free: 0.5859 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000179/0.1086, allocations: 213 kB / 0.7043 GB, free: 360 kB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.723e-06/0.1086, allocations: 4 kB / 0.7043 GB, free: 356 kB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001526/0.1088, allocations: 35.92 kB / 0.7044 GB, free: 320 kB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 3.466e-06/0.1088, allocations: 0 / 0.7044 GB, free: 320 kB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.745e-05/0.1088, allocations: 12 kB / 0.7044 GB, free: 308 kB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.324e-06/0.1088, allocations: 0 / 0.7044 GB, free: 308 kB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.525e-06/0.1088, allocations: 3.984 kB / 0.7044 GB, free: 304 kB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003166/0.1091, allocations: 331.5 kB / 0.7047 GB, free: 15.95 MB / 0.5418 GB
Notification: Performance of postOpt removeConstants (simulation): time 9.265e-05/0.1092, allocations: 47.67 kB / 0.7047 GB, free: 15.91 MB / 0.5418 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.581e-05/0.1092, allocations: 8 kB / 0.7047 GB, free: 15.9 MB / 0.5418 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001002/0.1093, allocations: 4 kB / 0.7047 GB, free: 15.89 MB / 0.5418 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 4.396e-05/0.1094, allocations: 19.91 kB / 0.7048 GB, free: 15.88 MB / 0.5418 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.408e-05/0.1094, allocations: 11.94 kB / 0.7048 GB, free: 15.86 MB / 0.5418 GB
Notification: Performance of sorting global known variables: time 0.0001656/0.1096, allocations: 239 kB / 0.705 GB, free: 15.63 MB / 0.5418 GB
Notification: Performance of sort global known variables: time 9.1e-08/0.1096, allocations: 0 / 0.705 GB, free: 15.63 MB / 0.5418 GB
Notification: Performance of remove unused functions: time 0.0003241/0.1099, allocations: 83.84 kB / 0.7051 GB, free: 15.55 MB / 0.5418 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001183/0.11, allocations: 99.25 kB / 0.7052 GB, free: 15.44 MB / 0.5418 GB
Notification: Performance of simCode: created initialization part: time 0.0002502/0.1103, allocations: 132.5 kB / 0.7053 GB, free: 15.3 MB / 0.5418 GB
Notification: Performance of simCode: created event and clocks part: time 2.144e-06/0.1103, allocations: 4 kB / 0.7053 GB, free: 15.3 MB / 0.5418 GB
Notification: Performance of simCode: created simulation system equations: time 8.172e-05/0.1103, allocations: 56.11 kB / 0.7054 GB, free: 15.24 MB / 0.5418 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004294/0.1108, allocations: 83.19 kB / 0.7054 GB, free: 15.17 MB / 0.5418 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001219/0.112, allocations: 0.6027 MB / 0.706 GB, free: 14.54 MB / 0.5418 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 7.935e-05/0.1121, allocations: 96.61 kB / 0.7061 GB, free: 14.42 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 0.0001213/0.1122, allocations: 34.95 kB / 0.7062 GB, free: 14.39 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001836/0.1124, allocations: 142.2 kB / 0.7063 GB, free: 14.25 MB / 0.5418 GB
Notification: Performance of SimCode: time 1.062e-06/0.1124, allocations: 4 kB / 0.7063 GB, free: 14.25 MB / 0.5418 GB
Notification: Performance of Templates: time 0.00662/0.119, allocations: 3.738 MB / 0.7099 GB, free: 10.77 MB / 0.5418 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.3775272741913795]