Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001322/0.001322, allocations: 73.88 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001013/0.001013, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9669/0.9669, allocations: 177.1 MB / 204.5 MB, free: 5.512 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08721/0.08721, allocations: 17.46 MB / 278.5 MB, free: 11.41 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.074e-06/2.074e-06, allocations: 0 / 354.8 MB, free: 9.574 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.898e-05/2.105e-05, allocations: 6.25 kB / 354.8 MB, free: 9.566 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.031/0.03102, allocations: 39.25 MB / 394 MB, free: 2.398 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01431/0.04533, allocations: 11.65 MB / 405.7 MB, free: 6.699 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001992/0.04732, allocations: 107.1 kB / 405.8 MB, free: 6.594 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00383/0.05115, allocations: 2.132 MB / 407.9 MB, free: 4.449 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004893/0.05605, allocations: 1.966 MB / 409.9 MB, free: 2.469 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1621/0.2182, allocations: 4.481 MB / 414.4 MB, free: 36.34 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.00856/0.2267, allocations: 4.801 MB / 419.2 MB, free: 35.38 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.00165/0.2284, allocations: 0.8171 MB / 420 MB, free: 35.15 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.004861/0.2332, allocations: 2.632 MB / 422.6 MB, free: 34.93 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003345/0.2366, allocations: 2.106 MB / 424.7 MB, free: 34.76 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0009358/0.2375, allocations: 405.4 kB / 425.1 MB, free: 34.76 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00453/0.242, allocations: 2.154 MB / 427.3 MB, free: 34.68 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0009912/0.243, allocations: 1.376 MB / 428.7 MB, free: 34.11 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002263/0.2453, allocations: 1.497 MB / 430.2 MB, free: 33.48 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.007655/0.2529, allocations: 5.67 MB / 435.8 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.729e-06/0.253, allocations: 0 / 435.8 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.703e-06/0.253, allocations: 0 / 435.8 MB, free: 31.23 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001976/0.2532, allocations: 3.469 kB / 435.8 MB, free: 31.23 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.011/0.2641, allocations: 5.763 MB / 441.6 MB, free: 27.41 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.661e-05/0.2642, allocations: 8.031 kB / 441.6 MB, free: 27.4 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.006264/0.2704, allocations: 2.174 MB / 443.8 MB, free: 25.25 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.006026/0.2765, allocations: 2.499 MB / 446.3 MB, free: 22.83 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003214/0.2768, allocations: 0.6349 MB / 446.9 MB, free: 22.13 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004121/0.2772, allocations: 404 kB / 447.3 MB, free: 21.75 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01199/0.2892, allocations: 4.876 MB / 452.2 MB, free: 17.06 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 7.186e-05/0.2893, allocations: 2.297 kB / 452.2 MB, free: 17.06 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002388/0.2895, allocations: 161.6 kB / 452.3 MB, free: 16.91 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0004282/0.2899, allocations: 0.5933 MB / 452.9 MB, free: 16.32 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01175/0.3017, allocations: 5.91 MB / 458.8 MB, free: 10.39 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.03134/0.333, allocations: 19.12 MB / 478 MB, free: 8.031 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001713/0.3347, allocations: 1.584 MB / 479.5 MB, free: 6.496 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001074/0.3358, allocations: 1.094 MB / 480.6 MB, free: 5.406 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01243/0.3482, allocations: 12.06 MB / 492.7 MB, free: 9.484 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.228e-05/0.3483, allocations: 58.05 kB / 492.8 MB, free: 9.422 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.048e-06/0.3483, allocations: 2.719 kB / 492.8 MB, free: 9.422 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.03645/0.3847, allocations: 18.77 MB / 0.4995 GB, free: 6.754 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.86e-05/0.3848, allocations: 77.41 kB / 0.4996 GB, free: 6.664 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002371/0.3872, allocations: 2.403 MB / 0.502 GB, free: 4.594 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0007363/0.3879, allocations: 65.7 kB / 0.502 GB, free: 4.523 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001302/0.3892, allocations: 2.481 MB / 0.5044 GB, free: 2.137 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001164/0.3904, allocations: 1.153 MB / 0.5056 GB, free: 1.047 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001615/0.392, allocations: 1.045 MB / 0.5066 GB, free: 80 kB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001236/0.3921, allocations: 479.4 kB / 0.5071 GB, free: 15.61 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001841/0.3939, allocations: 1.557 MB / 0.5086 GB, free: 14.05 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.002587/0.3965, allocations: 3.254 MB / 0.5117 GB, free: 10.2 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.007075/0.4036, allocations: 7.387 MB / 0.519 GB, free: 2.414 MB / 394.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.1647910391911864]