Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008641/0.0008641, allocations: 77.09 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000935/0.000935, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.016/1.016, allocations: 177.1 MB / 204.5 MB, free: 5.508 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1039/0.1039, allocations: 17.46 MB / 278.5 MB, free: 11.4 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.423e-06/1.423e-06, allocations: 0 / 354.8 MB, free: 9.574 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.006e-05/2.148e-05, allocations: 5.688 kB / 354.8 MB, free: 9.57 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.03928/0.0393, allocations: 39.26 MB / 394 MB, free: 2.402 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02072/0.06002, allocations: 11.66 MB / 405.7 MB, free: 6.699 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002291/0.06231, allocations: 107.1 kB / 405.8 MB, free: 6.594 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00373/0.06604, allocations: 2.14 MB / 407.9 MB, free: 4.441 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003506/0.06955, allocations: 1.959 MB / 409.9 MB, free: 2.469 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.1697/0.2393, allocations: 4.478 MB / 414.4 MB, free: 36.43 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.005531/0.2448, allocations: 4.795 MB / 419.2 MB, free: 35.48 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001093/0.2459, allocations: 0.8204 MB / 420 MB, free: 35.25 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003217/0.2491, allocations: 2.635 MB / 422.6 MB, free: 35.03 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002261/0.2514, allocations: 2.113 MB / 424.7 MB, free: 34.86 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003605/0.2517, allocations: 405.4 kB / 425.1 MB, free: 34.86 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003287/0.255, allocations: 2.138 MB / 427.3 MB, free: 34.78 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006289/0.2557, allocations: 1.384 MB / 428.7 MB, free: 34.22 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.00117/0.2568, allocations: 1.497 MB / 430.2 MB, free: 33.6 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004747/0.2616, allocations: 5.671 MB / 435.8 MB, free: 31.34 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.416e-06/0.2616, allocations: 0 / 435.8 MB, free: 31.34 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.283e-06/0.2616, allocations: 0 / 435.8 MB, free: 31.34 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001361/0.2617, allocations: 2.688 kB / 435.8 MB, free: 31.34 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.005768/0.2675, allocations: 5.76 MB / 441.6 MB, free: 27.54 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 2.832e-05/0.2675, allocations: 8.031 kB / 441.6 MB, free: 27.53 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002012/0.2695, allocations: 2.172 MB / 443.8 MB, free: 25.38 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001856/0.2714, allocations: 2.504 MB / 446.3 MB, free: 22.96 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001972/0.2716, allocations: 0.6345 MB / 446.9 MB, free: 22.26 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002805/0.2719, allocations: 396.1 kB / 447.3 MB, free: 21.89 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.003546/0.2754, allocations: 4.883 MB / 452.2 MB, free: 17.19 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.931e-05/0.2754, allocations: 192 / 452.2 MB, free: 17.19 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001777/0.2756, allocations: 158.5 kB / 452.3 MB, free: 17.04 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002888/0.2759, allocations: 0.5978 MB / 452.9 MB, free: 16.45 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003809/0.2797, allocations: 5.912 MB / 458.8 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01691/0.2966, allocations: 19.11 MB / 478 MB, free: 8.164 MB / 346.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001864/0.2985, allocations: 1.59 MB / 479.6 MB, free: 6.621 MB / 346.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001086/0.2996, allocations: 1.085 MB / 480.6 MB, free: 5.535 MB / 346.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01235/0.3119, allocations: 12.07 MB / 492.7 MB, free: 9.59 MB / 362.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.167e-05/0.312, allocations: 47.39 kB / 492.7 MB, free: 9.535 MB / 362.7 MB
Notification: Performance of pre-optimization done (n=227): time 3.436e-06/0.312, allocations: 3.938 kB / 492.8 MB, free: 9.531 MB / 362.7 MB
Notification: Performance of matching and sorting (n=324): time 0.03677/0.3487, allocations: 18.77 MB / 0.4995 GB, free: 6.867 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.378e-05/0.3488, allocations: 80.41 kB / 0.4996 GB, free: 6.777 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002335/0.3511, allocations: 2.397 MB / 0.502 GB, free: 4.711 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0008186/0.3519, allocations: 65.7 kB / 0.502 GB, free: 4.641 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.001263/0.3532, allocations: 2.49 MB / 0.5044 GB, free: 2.246 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.001298/0.3545, allocations: 1.154 MB / 0.5056 GB, free: 1.156 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.00142/0.3559, allocations: 1.037 MB / 0.5066 GB, free: 196 kB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001095/0.356, allocations: 476.8 kB / 0.507 GB, free: 15.72 MB / 394.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001742/0.3578, allocations: 1.558 MB / 0.5086 GB, free: 14.17 MB / 394.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0026/0.3604, allocations: 3.26 MB / 0.5117 GB, free: 10.32 MB / 394.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.00807/0.3684, allocations: 7.396 MB / 0.519 GB, free: 2.516 MB / 394.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.150053834076971]