Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001361/0.001361, allocations: 73.09 kB / 20.66 MB, free: 3.844 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001247/0.001247, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.013/1.013, allocations: 177.1 MB / 204.5 MB, free: 5.516 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09921/0.09921, allocations: 17.46 MB / 278.5 MB, free: 11.4 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.493e-06/1.493e-06, allocations: 0 / 354.8 MB, free: 9.578 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.368e-05/2.517e-05, allocations: 6.312 kB / 354.8 MB, free: 9.57 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.05346/0.05348, allocations: 39.67 MB / 394.4 MB, free: 2 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0155/0.06899, allocations: 11.9 MB / 406.3 MB, free: 6.051 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002638/0.07162, allocations: 99.25 kB / 406.4 MB, free: 5.953 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004202/0.07583, allocations: 2.249 MB / 408.7 MB, free: 3.691 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00545/0.08128, allocations: 2.016 MB / 410.7 MB, free: 1.66 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.266/0.3473, allocations: 4.533 MB / 415.2 MB, free: 29.77 MB / 330.8 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007907/0.3552, allocations: 5.035 MB / 420.3 MB, free: 28.64 MB / 330.8 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002002/0.3572, allocations: 1.329 MB / 421.6 MB, free: 28.31 MB / 330.8 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.006074/0.3633, allocations: 3.149 MB / 424.8 MB, free: 28.1 MB / 330.8 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004471/0.3678, allocations: 2.415 MB / 427.2 MB, free: 27.5 MB / 330.8 MB
Notification: Performance of NFPackage.collectConstants: time 0.001038/0.3688, allocations: 0.5281 MB / 427.7 MB, free: 27.5 MB / 330.8 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005764/0.3746, allocations: 2.315 MB / 430 MB, free: 27.2 MB / 330.8 MB
Notification: Performance of NFScalarize.scalarize: time 0.001781/0.3764, allocations: 1.7 MB / 431.7 MB, free: 26.3 MB / 330.8 MB
Notification: Performance of NFVerifyModel.verify: time 0.004195/0.3806, allocations: 1.781 MB / 433.5 MB, free: 25.55 MB / 330.8 MB
Notification: Performance of NFConvertDAE.convert: time 0.009744/0.3903, allocations: 6.628 MB / 440.1 MB, free: 22.23 MB / 330.8 MB
Notification: Performance of FrontEnd - DAE generated: time 5.34e-06/0.3903, allocations: 2.656 kB / 440.1 MB, free: 22.23 MB / 330.8 MB
Notification: Performance of FrontEnd: time 2.114e-06/0.3903, allocations: 0 / 440.1 MB, free: 22.23 MB / 330.8 MB
Notification: Performance of Transformations before backend: time 0.0002054/0.3905, allocations: 3.531 kB / 440.1 MB, free: 22.23 MB / 330.8 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.007589/0.3981, allocations: 6.626 MB / 446.8 MB, free: 18.03 MB / 330.8 MB
Notification: Performance of prepare preOptimizeDAE: time 4.11e-05/0.3981, allocations: 12.19 kB / 446.8 MB, free: 18.03 MB / 330.8 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003207/0.4013, allocations: 2.276 MB / 449 MB, free: 16.96 MB / 330.8 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002628/0.404, allocations: 2.514 MB / 451.6 MB, free: 15.2 MB / 330.8 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002601/0.4042, allocations: 0.7303 MB / 452.3 MB, free: 14.39 MB / 330.8 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003486/0.4046, allocations: 456.1 kB / 452.7 MB, free: 13.95 MB / 330.8 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004942/0.4095, allocations: 4.993 MB / 457.7 MB, free: 9.152 MB / 330.8 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.83e-05/0.4096, allocations: 192 / 457.7 MB, free: 9.152 MB / 330.8 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002103/0.4098, allocations: 185.1 kB / 457.9 MB, free: 8.98 MB / 330.8 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002981/0.4101, allocations: 0.5479 MB / 458.5 MB, free: 8.434 MB / 330.8 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003922/0.414, allocations: 5.014 MB / 463.5 MB, free: 3.406 MB / 330.8 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0279/0.4419, allocations: 21.39 MB / 484.9 MB, free: 14.88 MB / 362.8 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002351/0.4443, allocations: 1.718 MB / 486.6 MB, free: 13.19 MB / 362.8 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001644/0.4459, allocations: 1.166 MB / 487.7 MB, free: 12.02 MB / 362.8 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01479/0.4607, allocations: 13.91 MB / 0.4899 GB, free: 14.23 MB / 378.8 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.648e-05/0.4607, allocations: 58.05 kB / 0.49 GB, free: 14.16 MB / 378.8 MB
Notification: Performance of pre-optimization done (n=289): time 3.647e-06/0.4607, allocations: 0 / 0.49 GB, free: 14.16 MB / 378.8 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.2764828125946224]