Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009688/0.0009688, allocations: 73.88 kB / 20.65 MB, free: 3.848 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001968/0.001968, allocations: 169 kB / 24.06 MB, free: 456 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.048/1.048, allocations: 177.1 MB / 204.5 MB, free: 5.484 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09233/0.09233, allocations: 17.45 MB / 278.5 MB, free: 11.39 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction")
translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.914e-06/1.914e-06, allocations: 0 / 354.8 MB, free: 9.578 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.018e-05/3.209e-05, allocations: 6.25 kB / 354.8 MB, free: 9.57 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction): time 0.04619/0.04622, allocations: 46.87 MB / 401.6 MB, free: 10.76 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2004/0.2467, allocations: 13.76 MB / 415.4 MB, free: 34.18 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003706/0.2504, allocations: 152.1 kB / 415.6 MB, free: 34.18 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00475/0.2551, allocations: 2.634 MB / 418.2 MB, free: 34.12 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.006099/0.2612, allocations: 2.845 MB / 421 MB, free: 33.46 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.007056/0.2683, allocations: 5.07 MB / 426.1 MB, free: 33.12 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.009357/0.2776, allocations: 7.514 MB / 433.6 MB, free: 29.81 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001962/0.2796, allocations: 1.678 MB / 435.3 MB, free: 28.91 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005465/0.285, allocations: 4.566 MB / 439.9 MB, free: 26.22 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0041/0.2891, allocations: 3.523 MB / 443.4 MB, free: 24.48 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001325/0.2905, allocations: 0.7356 MB / 444.1 MB, free: 24.48 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004352/0.2948, allocations: 2.557 MB / 446.7 MB, free: 22.45 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001009/0.2958, allocations: 2.465 MB / 449.1 MB, free: 20.09 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002262/0.2981, allocations: 2.566 MB / 451.7 MB, free: 17.63 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.007071/0.3052, allocations: 8.853 MB / 460.6 MB, free: 9.492 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.919e-06/0.3052, allocations: 2.656 kB / 460.6 MB, free: 9.492 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.583e-06/0.3052, allocations: 0 / 460.6 MB, free: 9.492 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 9.728e-05/0.3053, allocations: 3.938 kB / 460.6 MB, free: 9.488 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 2093
 * Number of variables: 2093
Notification: Performance of Generate backend data structure: time 0.00824/0.3135, allocations: 9.542 MB / 470.1 MB, free: 432 kB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.221e-05/0.3135, allocations: 12.03 kB / 470.1 MB, free: 420 kB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004069/0.3176, allocations: 3.508 MB / 473.6 MB, free: 12.94 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003432/0.321, allocations: 3.736 MB / 477.4 MB, free: 9.203 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0005032/0.3215, allocations: 1.097 MB / 478.5 MB, free: 7.98 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.000575/0.3221, allocations: 0.6514 MB / 479.1 MB, free: 7.348 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.006942/0.3291, allocations: 7.513 MB / 486.6 MB, free: 116 kB / 346.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 7.549e-05/0.3291, allocations: 192 / 486.6 MB, free: 116 kB / 346.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003473/0.3295, allocations: 266 kB / 486.9 MB, free: 15.87 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0005457/0.33, allocations: 0.8385 MB / 487.7 MB, free: 15.03 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.006429/0.3365, allocations: 8.013 MB / 495.7 MB, free: 6.973 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02913/0.3656, allocations: 32.11 MB / 0.5155 GB, free: 7.672 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002948/0.3685, allocations: 2.672 MB / 0.5181 GB, free: 5.023 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001805/0.3703, allocations: 1.792 MB / 0.5198 GB, free: 3.223 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.02143/0.3918, allocations: 20.56 MB / 0.5399 GB, free: 14.83 MB / 426.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.756e-05/0.3918, allocations: 67.52 kB / 0.54 GB, free: 14.76 MB / 426.7 MB
Notification: Performance of pre-optimization done (n=440): time 4.969e-06/0.3918, allocations: 0 / 0.54 GB, free: 14.76 MB / 426.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.3876310638152063]