Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001233/0.001233, allocations: 69.89 kB / 20.65 MB, free: 3.848 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001728/0.001728, allocations: 173 kB / 24.06 MB, free: 452 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9508/0.9508, allocations: 177.1 MB / 204.5 MB, free: 4.824 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.08633/0.08633, allocations: 17.38 MB / 278.4 MB, free: 11.2 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.GasSolubility_blood,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility_blood")
translateModel(Chemical.Obsolete.Examples.GasSolubility_blood,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.GasSolubility_blood") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.543e-06/1.543e-06, allocations: 0 / 354.6 MB, free: 9.691 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.81e-05/1.965e-05, allocations: 2.312 kB / 354.6 MB, free: 9.688 MB / 282.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.GasSolubility_blood): time 0.006389/0.006408, allocations: 6.814 MB / 361.5 MB, free: 2.84 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01459/0.021, allocations: 19.18 MB / 380.6 MB, free: 15.59 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0007186/0.02172, allocations: 19.81 kB / 380.7 MB, free: 15.57 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0008046/0.02252, allocations: 376.9 kB / 381 MB, free: 15.2 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003338/0.02586, allocations: 1.695 MB / 382.7 MB, free: 13.49 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.00453/0.03039, allocations: 2.555 MB / 385.3 MB, free: 10.92 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.001738/0.03213, allocations: 1.891 MB / 387.2 MB, free: 9.02 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0007393/0.03287, allocations: 0.7897 MB / 388 MB, free: 8.211 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0009203/0.03379, allocations: 1.209 MB / 389.2 MB, free: 7 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0007855/0.03458, allocations: 0.7834 MB / 390 MB, free: 6.215 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001628/0.03474, allocations: 152 kB / 390.1 MB, free: 6.066 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.00358/0.03832, allocations: 1.98 MB / 392.1 MB, free: 4.082 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002531/0.03857, allocations: 374.8 kB / 392.4 MB, free: 3.715 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.000417/0.03899, allocations: 0.573 MB / 393 MB, free: 3.141 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004113/0.0431, allocations: 3.634 MB / 396.7 MB, free: 15.49 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.368e-06/0.04311, allocations: 0 / 396.7 MB, free: 15.49 MB / 330.7 MB
Notification: Performance of FrontEnd: time 8.12e-07/0.04311, allocations: 0 / 396.7 MB, free: 15.49 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 1.161e-05/0.04312, allocations: 3.938 kB / 396.7 MB, free: 15.48 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 314
 * Number of variables: 314
Notification: Performance of Generate backend data structure: time 0.002086/0.0452, allocations: 2.11 MB / 398.8 MB, free: 13.33 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.129e-05/0.04525, allocations: 11.97 kB / 398.8 MB, free: 13.32 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001122/0.04637, allocations: 0.638 MB / 399.4 MB, free: 12.68 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007354/0.0471, allocations: 0.7101 MB / 400.1 MB, free: 11.94 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.195e-05/0.04715, allocations: 94.84 kB / 400.2 MB, free: 11.84 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001422/0.0473, allocations: 132.3 kB / 400.3 MB, free: 11.71 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001068/0.04837, allocations: 1.104 MB / 401.5 MB, free: 10.56 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.898e-05/0.04838, allocations: 192 / 401.5 MB, free: 10.56 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.389e-05/0.04847, allocations: 44.38 kB / 401.5 MB, free: 10.52 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.685e-05/0.04848, allocations: 35.94 kB / 401.5 MB, free: 10.48 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001181/0.04967, allocations: 1.17 MB / 402.7 MB, free: 9.297 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00399/0.05366, allocations: 3.661 MB / 406.4 MB, free: 5.566 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001997/0.05565, allocations: 2.015 MB / 408.4 MB, free: 3.539 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000293/0.05595, allocations: 305.5 kB / 408.7 MB, free: 3.238 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.003151/0.0591, allocations: 2.728 MB / 411.4 MB, free: 500 kB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.32e-05/0.05912, allocations: 46.05 kB / 411.4 MB, free: 444 kB / 330.7 MB
Notification: Performance of pre-optimization done (n=72): time 1.513e-06/0.05912, allocations: 0 / 411.4 MB, free: 444 kB / 330.7 MB
Notification: Performance of matching and sorting (n=89): time 0.1441/0.2032, allocations: 2.574 MB / 414 MB, free: 59.12 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.772e-05/0.2033, allocations: 61.97 kB / 414.1 MB, free: 59.06 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000703/0.204, allocations: 0.9479 MB / 415 MB, free: 58.86 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 3.892e-05/0.204, allocations: 41.77 kB / 415.1 MB, free: 58.82 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002752/0.2043, allocations: 0.7606 MB / 415.8 MB, free: 58.45 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0001533/0.2044, allocations: 335.8 kB / 416.2 MB, free: 58.27 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002887/0.2047, allocations: 307.9 kB / 416.5 MB, free: 58.23 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 9.381e-05/0.2048, allocations: 0.5295 MB / 417 MB, free: 57.75 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002634/0.2051, allocations: 187.2 kB / 417.2 MB, free: 57.75 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000462/0.2056, allocations: 0.8774 MB / 418 MB, free: 56.9 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0007875/0.2063, allocations: 1.175 MB / 419.2 MB, free: 56.05 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.486e-06/0.2064, allocations: 4.531 kB / 419.2 MB, free: 56.05 MB / 330.7 MB
Notification: Performance of matching and sorting (n=185) (initialization): time 0.00206/0.2084, allocations: 1.29 MB / 420.5 MB, free: 55.91 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.225e-05/0.2084, allocations: 11.59 kB / 420.5 MB, free: 55.91 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.967e-05/0.2085, allocations: 15.28 kB / 420.5 MB, free: 55.91 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001363/0.2098, allocations: 350.9 kB / 420.9 MB, free: 55.89 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006208/0.2104, allocations: 348.6 kB / 421.2 MB, free: 55.89 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.002424/0.2129, allocations: 4.312 MB / 425.5 MB, free: 52.03 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004673/0.2133, allocations: 44.72 kB / 425.6 MB, free: 52.03 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.512e-05/0.2134, allocations: 78.75 kB / 425.7 MB, free: 52.03 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 71
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (179):
 * Single equations (assignments): 177
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002085/0.2136, allocations: 253.6 kB / 425.9 MB, free: 51.86 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000141/0.2138, allocations: 134.7 kB / 426 MB, free: 51.8 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001664/0.2154, allocations: 0.9871 MB / 427 MB, free: 51.69 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.839e-06/0.2154, allocations: 12.31 kB / 427 MB, free: 51.69 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.916e-06/0.2154, allocations: 3.969 kB / 427 MB, free: 51.69 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.245e-06/0.2154, allocations: 5.016 kB / 427 MB, free: 51.69 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0006906/0.2161, allocations: 0.8098 MB / 427.9 MB, free: 51.45 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.877e-06/0.2161, allocations: 3.938 kB / 427.9 MB, free: 51.45 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003303/0.2165, allocations: 183.3 kB / 428 MB, free: 51.45 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.001245/0.2177, allocations: 325.5 kB / 428.4 MB, free: 51.41 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.974e-05/0.2177, allocations: 33.73 kB / 428.4 MB, free: 51.41 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.001922/0.2197, allocations: 4.216 MB / 432.6 MB, free: 47.45 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.153e-06/0.2197, allocations: 4.031 kB / 432.6 MB, free: 47.45 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001592/0.2213, allocations: 1.211 MB / 433.8 MB, free: 46.99 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 8.049e-05/0.2213, allocations: 99.5 kB / 433.9 MB, free: 46.93 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.151e-05/0.2214, allocations: 17.06 kB / 433.9 MB, free: 46.91 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002386/0.2217, allocations: 19.28 kB / 434 MB, free: 46.9 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001088/0.2218, allocations: 83.62 kB / 434 MB, free: 46.89 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.182e-05/0.2218, allocations: 37.41 kB / 434.1 MB, free: 46.88 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.000382/0.2222, allocations: 0.5474 MB / 434.6 MB, free: 46.73 MB / 330.7 MB
Notification: Performance of sort global known variables: time 8e-08/0.2222, allocations: 0.875 kB / 434.6 MB, free: 46.73 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.001634/0.2238, allocations: 0.7855 MB / 435.4 MB, free: 46.66 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 5 (blood_plasma.temperature,CO2_unbound_plasma.logn,O2_unbound_plasma.logn,water.logn,others.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (93):
 * Single equations (assignments): 91
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001134/0.225, allocations: 1.002 MB / 436.4 MB, free: 46.43 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.001132/0.2261, allocations: 1.076 MB / 437.5 MB, free: 45.84 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.494e-06/0.2261, allocations: 0 / 437.5 MB, free: 45.84 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0005031/0.2266, allocations: 0.6723 MB / 438.2 MB, free: 45.23 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008045/0.2274, allocations: 256.3 kB / 438.4 MB, free: 45.03 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002748/0.2302, allocations: 1.952 MB / 440.4 MB, free: 43.19 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001372/0.2303, allocations: 206.1 kB / 440.6 MB, free: 43.01 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0006574/0.231, allocations: 253.7 kB / 440.8 MB, free: 42.8 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005383/0.2315, allocations: 393.8 kB / 441.2 MB, free: 42.48 MB / 330.7 MB
Notification: Performance of SimCode: time 8.01e-07/0.2315, allocations: 0 / 441.2 MB, free: 42.48 MB / 330.7 MB
Notification: Performance of Templates: time 0.03349/0.265, allocations: 31.92 MB / 473.1 MB, free: 10.92 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.sim & ./Chemical_Chemical.Obsolete.Examples.GasSolubility_blood -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.GasSolubility_blood.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.9355838168412447]