Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001039/0.001039, allocations: 73.97 kB / 20.66 MB, free: 3.84 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00119/0.00119, allocations: 173 kB / 24.06 MB, free: 452 kB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9692/0.9692, allocations: 177.1 MB / 204.5 MB, free: 5.496 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.09638/0.09638, allocations: 17.37 MB / 278.4 MB, free: 11.49 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.503e-06/1.503e-06, allocations: 0 / 354.7 MB, free: 9.68 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.896e-05/3.046e-05, allocations: 9.062 kB / 354.7 MB, free: 9.672 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02641/0.02645, allocations: 26.92 MB / 381.6 MB, free: 14.89 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005492/0.03194, allocations: 6.192 MB / 387.8 MB, free: 8.68 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002832/0.03222, allocations: 11.88 kB / 387.8 MB, free: 8.668 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.000417/0.03264, allocations: 146.8 kB / 387.9 MB, free: 8.523 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.0005287/0.03317, allocations: 265.8 kB / 388.2 MB, free: 8.262 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001795/0.03496, allocations: 1.009 MB / 389.2 MB, free: 7.246 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0007506/0.03571, allocations: 0.5291 MB / 389.7 MB, free: 6.715 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002237/0.03594, allocations: 165.1 kB / 389.9 MB, free: 6.551 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002424/0.03618, allocations: 327.4 kB / 390.2 MB, free: 6.23 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002742/0.03645, allocations: 231.5 kB / 390.4 MB, free: 6.004 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 4.124e-05/0.03649, allocations: 28 kB / 390.5 MB, free: 5.977 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0009814/0.03748, allocations: 0.5262 MB / 391 MB, free: 5.449 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 9.576e-05/0.03757, allocations: 91.66 kB / 391.1 MB, free: 5.359 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001137/0.03768, allocations: 143.6 kB / 391.2 MB, free: 5.219 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001137/0.03882, allocations: 1.035 MB / 392.3 MB, free: 4.18 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.138e-06/0.03883, allocations: 0 / 392.3 MB, free: 4.18 MB / 314.7 MB
Notification: Performance of FrontEnd: time 8.92e-07/0.03883, allocations: 0 / 392.3 MB, free: 4.18 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 5.831e-06/0.03883, allocations: 0 / 392.3 MB, free: 4.18 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0007541/0.03959, allocations: 0.8334 MB / 393.1 MB, free: 3.305 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.76e-05/0.03962, allocations: 15.97 kB / 393.1 MB, free: 3.289 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003804/0.04, allocations: 183.7 kB / 393.3 MB, free: 3.109 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003501/0.04035, allocations: 340.3 kB / 393.6 MB, free: 2.75 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.685e-05/0.04037, allocations: 21.03 kB / 393.6 MB, free: 2.73 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.448e-05/0.04041, allocations: 28.31 kB / 393.7 MB, free: 2.703 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003345/0.04074, allocations: 372.2 kB / 394 MB, free: 2.293 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.335e-05/0.04075, allocations: 11.92 kB / 394 MB, free: 2.281 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.837e-05/0.04078, allocations: 12 kB / 394.1 MB, free: 2.27 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.583e-06/0.04079, allocations: 8 kB / 394.1 MB, free: 2.262 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003678/0.04116, allocations: 373 kB / 394.4 MB, free: 1.895 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001392/0.04255, allocations: 2.024 MB / 396.5 MB, free: 15.79 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001572/0.04271, allocations: 98.88 kB / 396.5 MB, free: 15.68 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 6.146e-05/0.04277, allocations: 46.86 kB / 396.6 MB, free: 15.63 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001345/0.04411, allocations: 0.9913 MB / 397.6 MB, free: 14.62 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.189e-05/0.04413, allocations: 41.33 kB / 397.6 MB, free: 14.57 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.072e-06/0.04413, allocations: 0 / 397.6 MB, free: 14.57 MB / 330.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0002282/0.04436, allocations: 125.7 kB / 397.8 MB, free: 14.44 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.229e-05/0.0444, allocations: 55.41 kB / 397.8 MB, free: 14.37 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002412/0.04464, allocations: 434.2 kB / 398.2 MB, free: 13.93 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.32e-05/0.04465, allocations: 29.7 kB / 398.3 MB, free: 13.89 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001369/0.04479, allocations: 326.3 kB / 398.6 MB, free: 13.57 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.358e-05/0.04481, allocations: 39.72 kB / 398.6 MB, free: 13.53 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.454e-05/0.04488, allocations: 83.25 kB / 398.7 MB, free: 13.44 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001309/0.04502, allocations: 0.5275 MB / 399.2 MB, free: 12.9 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.368e-05/0.04506, allocations: 31.97 kB / 399.3 MB, free: 12.87 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001696/0.04523, allocations: 345.3 kB / 399.6 MB, free: 12.39 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002607/0.04549, allocations: 416.6 kB / 400 MB, free: 11.83 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.016e-06/0.04549, allocations: 3.938 kB / 400 MB, free: 11.83 MB / 330.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0003201/0.04581, allocations: 305.7 kB / 400.3 MB, free: 11.52 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.603e-05/0.04583, allocations: 12 kB / 400.3 MB, free: 11.51 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.516e-06/0.04584, allocations: 8 kB / 400.3 MB, free: 11.5 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.463e-05/0.04585, allocations: 12 kB / 400.3 MB, free: 11.49 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001513/0.046, allocations: 87.83 kB / 400.4 MB, free: 11.41 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.668e-06/0.04601, allocations: 19.88 kB / 400.4 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000122/0.04613, allocations: 35.73 kB / 400.5 MB, free: 11.35 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.021e-05/0.04617, allocations: 27.98 kB / 400.5 MB, free: 11.32 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001031/0.04627, allocations: 188.3 kB / 400.7 MB, free: 11.13 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.318e-05/0.04631, allocations: 39.77 kB / 400.7 MB, free: 11.09 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003063/0.04662, allocations: 249.6 kB / 401 MB, free: 10.81 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.176e-06/0.04662, allocations: 0 / 401 MB, free: 10.81 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.553e-06/0.04662, allocations: 0 / 401 MB, free: 10.81 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.37e-06/0.04663, allocations: 4.031 kB / 401 MB, free: 10.8 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003012/0.04693, allocations: 0.4889 MB / 401.5 MB, free: 10.28 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.633e-06/0.04693, allocations: 4.062 kB / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.748e-06/0.04694, allocations: 0 / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.745e-06/0.04694, allocations: 4 kB / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.526e-06/0.04695, allocations: 0 / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.484e-06/0.04695, allocations: 3.984 kB / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.273e-06/0.04695, allocations: 0 / 401.5 MB, free: 10.27 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 7.609e-05/0.04703, allocations: 100.2 kB / 401.6 MB, free: 10.14 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3e-05/0.04706, allocations: 31.8 kB / 401.6 MB, free: 10.11 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.671e-05/0.04708, allocations: 3.953 kB / 401.6 MB, free: 10.11 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.979e-05/0.04712, allocations: 0 / 401.6 MB, free: 10.11 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.069e-05/0.04713, allocations: 8.031 kB / 401.6 MB, free: 10.1 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.854e-06/0.04714, allocations: 0 / 401.6 MB, free: 10.1 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 0.0001494/0.04729, allocations: 283 kB / 401.9 MB, free: 9.824 MB / 330.7 MB
Notification: Performance of sort global known variables: time 1.91e-07/0.04729, allocations: 4 kB / 401.9 MB, free: 9.82 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0004022/0.04769, allocations: 191.2 kB / 402.1 MB, free: 9.633 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003938/0.04808, allocations: 326.5 kB / 402.4 MB, free: 9.301 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.000154/0.04824, allocations: 125.2 kB / 402.5 MB, free: 9.176 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.625e-06/0.04824, allocations: 4 kB / 402.5 MB, free: 9.172 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 6.723e-06/0.04824, allocations: 7.688 kB / 402.5 MB, free: 9.16 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003087/0.04855, allocations: 85.88 kB / 402.6 MB, free: 9.078 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009422/0.0495, allocations: 0.5336 MB / 403.1 MB, free: 8.516 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.761e-05/0.04954, allocations: 88.61 kB / 403.2 MB, free: 8.41 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001638/0.04971, allocations: 92.84 kB / 403.3 MB, free: 8.324 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001419/0.04985, allocations: 150.1 kB / 403.5 MB, free: 8.176 MB / 330.7 MB
Notification: Performance of SimCode: time 5.01e-07/0.04985, allocations: 0 / 403.5 MB, free: 8.176 MB / 330.7 MB
Notification: Performance of Templates: time 0.009211/0.05906, allocations: 7.205 MB / 410.7 MB, free: 1.047 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240  -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 3.1955685350112617]