Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001282/0.001282, allocations: 77.95 kB / 20.66 MB, free: 3.832 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001392/0.001392, allocations: 165 kB / 24.05 MB, free: 452 kB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9634/0.9634, allocations: 177.1 MB / 204.5 MB, free: 5.484 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.05503/0.05503, allocations: 12.76 MB / 273.8 MB, free: 104 kB / 250.7 MB " [Timeout remaining time 180] Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.623e-06/1.623e-06, allocations: 0 / 348 MB, free: 1.973 MB / 314.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 2.38e-05/2.542e-05, allocations: 2.312 kB / 348 MB, free: 1.969 MB / 314.7 MB Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC): time 0.00839/0.008415, allocations: 10.41 MB / 358.4 MB, free: 7.523 MB / 330.7 MB Notification: Performance of NFInst.instExpressions: time 0.01136/0.01978, allocations: 11.05 MB / 369.4 MB, free: 12.43 MB / 346.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0009014/0.02068, allocations: 102.9 kB / 369.5 MB, free: 12.32 MB / 346.7 MB Notification: Performance of NFTyping.typeComponents: time 0.0005653/0.02124, allocations: 408 kB / 369.9 MB, free: 11.92 MB / 346.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.UnitConversions.findUnit'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'. Notification: Performance of NFTyping.typeBindings: time 0.003887/0.02513, allocations: 2.194 MB / 372.1 MB, free: 9.715 MB / 346.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R1.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R2.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R3.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.T4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R4.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.R0.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'. Notification: Performance of NFTyping.typeClassSections: time 0.00397/0.0291, allocations: 2.013 MB / 374.1 MB, free: 7.699 MB / 346.7 MB Notification: Performance of NFFlatten.flatten: time 0.003127/0.03223, allocations: 2.865 MB / 377 MB, free: 4.824 MB / 346.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0006233/0.03285, allocations: 388.1 kB / 377.4 MB, free: 4.414 MB / 346.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001613/0.03446, allocations: 1.379 MB / 378.8 MB, free: 3.031 MB / 346.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001572/0.03603, allocations: 1.231 MB / 380 MB, free: 1.797 MB / 346.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0004215/0.03646, allocations: 156 kB / 380.1 MB, free: 1.645 MB / 346.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0003139/0.03677, allocations: 156 kB / 380.3 MB, free: 1.492 MB / 346.7 MB Notification: Performance of NFScalarize.scalarize: time 0.0003683/0.03714, allocations: 0.5448 MB / 380.8 MB, free: 0.9453 MB / 346.7 MB Notification: Performance of NFVerifyModel.verify: time 0.0006581/0.0378, allocations: 0.7128 MB / 381.5 MB, free: 236 kB / 346.7 MB Notification: Performance of NFConvertDAE.convert: time 0.001699/0.0395, allocations: 1.872 MB / 383.4 MB, free: 14.35 MB / 362.7 MB Notification: Performance of FrontEnd - DAE generated: time 4.448e-06/0.0395, allocations: 4 kB / 383.4 MB, free: 14.35 MB / 362.7 MB Notification: Performance of FrontEnd: time 1.012e-06/0.0395, allocations: 0 / 383.4 MB, free: 14.35 MB / 362.7 MB Notification: Performance of Transformations before backend: time 5.697e-05/0.03956, allocations: 0 / 383.4 MB, free: 14.35 MB / 362.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 287 * Number of variables: 287 Notification: Performance of Generate backend data structure: time 0.002812/0.04237, allocations: 2.617 MB / 386 MB, free: 11.68 MB / 362.7 MB Notification: Performance of prepare preOptimizeDAE: time 3.481e-05/0.04241, allocations: 11.98 kB / 386.1 MB, free: 11.67 MB / 362.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006925/0.0431, allocations: 423.3 kB / 386.5 MB, free: 11.25 MB / 362.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0016/0.0447, allocations: 1.3 MB / 387.8 MB, free: 9.914 MB / 362.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 4.771e-05/0.04475, allocations: 90.64 kB / 387.9 MB, free: 9.824 MB / 362.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001142/0.04486, allocations: 112.4 kB / 388 MB, free: 9.715 MB / 362.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008051/0.04566, allocations: 0.7967 MB / 388.8 MB, free: 8.871 MB / 362.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 1.873e-05/0.04568, allocations: 3.938 kB / 388.8 MB, free: 8.867 MB / 362.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.424e-05/0.04575, allocations: 44 kB / 388.8 MB, free: 8.824 MB / 362.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.607e-05/0.04576, allocations: 28 kB / 388.8 MB, free: 8.797 MB / 362.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005023/0.04627, allocations: 379.3 kB / 389.2 MB, free: 8.414 MB / 362.7 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.003688/0.04995, allocations: 3.172 MB / 392.4 MB, free: 5.176 MB / 362.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0004502/0.0504, allocations: 414.1 kB / 392.8 MB, free: 4.746 MB / 362.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002359/0.05064, allocations: 221.2 kB / 393 MB, free: 4.523 MB / 362.7 MB Notification: Performance of preOpt evalFunc (simulation): time 5.065e-05/0.05069, allocations: 20.94 kB / 393 MB, free: 4.504 MB / 362.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.435e-05/0.05072, allocations: 46.39 kB / 393.1 MB, free: 4.449 MB / 362.7 MB Notification: Performance of pre-optimization done (n=98): time 2.064e-06/0.05072, allocations: 0 / 393.1 MB, free: 4.449 MB / 362.7 MB Notification: Performance of matching and sorting (n=161): time 0.02245/0.07316, allocations: 6.992 MB / 400.1 MB, free: 13.43 MB / 378.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 4.498e-05/0.07321, allocations: 94.42 kB / 400.1 MB, free: 13.32 MB / 378.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001378/0.07459, allocations: 1.502 MB / 401.7 MB, free: 11.77 MB / 378.7 MB Notification: Performance of collectPreVariables (initialization): time 8.992e-05/0.07468, allocations: 53.7 kB / 401.7 MB, free: 11.71 MB / 378.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0004858/0.07516, allocations: 0.9701 MB / 402.7 MB, free: 10.72 MB / 378.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0003355/0.0755, allocations: 0.5849 MB / 403.3 MB, free: 10.13 MB / 378.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004006/0.0759, allocations: 352.9 kB / 403.6 MB, free: 9.781 MB / 378.7 MB Notification: Performance of setup shared object (initialization): time 9.969e-05/0.076, allocations: 484.7 kB / 404.1 MB, free: 9.305 MB / 378.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003841/0.07638, allocations: 235.8 kB / 404.3 MB, free: 9.074 MB / 378.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006452/0.07703, allocations: 0.8117 MB / 405.1 MB, free: 8.043 MB / 378.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.001163/0.07819, allocations: 1.226 MB / 406.3 MB, free: 6.602 MB / 378.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.07e-06/0.07819, allocations: 0 / 406.3 MB, free: 6.602 MB / 378.7 MB Notification: Performance of matching and sorting (n=236) (initialization): time 0.008382/0.08658, allocations: 2.966 MB / 409.3 MB, free: 3.613 MB / 378.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.108e-05/0.0866, allocations: 12 kB / 409.3 MB, free: 3.602 MB / 378.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.56e-05/0.08661, allocations: 12 kB / 409.3 MB, free: 3.59 MB / 378.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.01038/0.09699, allocations: 2.952 MB / 412.3 MB, free: 0.625 MB / 378.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005146/0.0975, allocations: 235.6 kB / 412.5 MB, free: 404 kB / 378.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.01492/0.1124, allocations: 10.43 MB / 423 MB, free: 5.734 MB / 394.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.00101/0.1134, allocations: 83.94 kB / 423 MB, free: 5.652 MB / 394.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.869e-05/0.1135, allocations: 55.98 kB / 423.1 MB, free: 5.598 MB / 394.7 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 52 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (120): * Single equations (assignments): 118 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 1 system {(3,56,100.0%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(10,49)} Notification: Performance of prepare postOptimizeDAE: time 0.000391/0.1139, allocations: 264.1 kB / 423.3 MB, free: 5.328 MB / 394.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002953/0.1142, allocations: 262.6 kB / 423.6 MB, free: 5.07 MB / 394.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0003257/0.1145, allocations: 329.9 kB / 423.9 MB, free: 4.746 MB / 394.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.071e-05/0.1146, allocations: 23.92 kB / 423.9 MB, free: 4.723 MB / 394.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 2.64e-05/0.1146, allocations: 8 kB / 424 MB, free: 4.715 MB / 394.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.588e-06/0.1146, allocations: 11.97 kB / 424 MB, free: 4.703 MB / 394.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001244/0.1158, allocations: 0.955 MB / 424.9 MB, free: 3.719 MB / 394.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.342e-06/0.1158, allocations: 7.938 kB / 424.9 MB, free: 3.711 MB / 394.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000228/0.1161, allocations: 91.89 kB / 425 MB, free: 3.621 MB / 394.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.01038/0.1264, allocations: 2.777 MB / 427.8 MB, free: 0.832 MB / 394.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.537e-05/0.1265, allocations: 35.97 kB / 427.8 MB, free: 0.7969 MB / 394.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.01528/0.1418, allocations: 10.35 MB / 438.2 MB, free: 6.203 MB / 410.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.713e-06/0.1418, allocations: 0 / 438.2 MB, free: 6.203 MB / 410.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.008329/0.1502, allocations: 3.154 MB / 441.3 MB, free: 3.016 MB / 410.7 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0006613/0.1508, allocations: 404.2 kB / 441.7 MB, free: 2.617 MB / 410.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001795/0.151, allocations: 28 kB / 441.8 MB, free: 2.59 MB / 410.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006131/0.1516, allocations: 43.89 kB / 441.8 MB, free: 2.547 MB / 410.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003369/0.1519, allocations: 158 kB / 442 MB, free: 2.391 MB / 410.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.49e-05/0.152, allocations: 24 kB / 442 MB, free: 2.367 MB / 410.7 MB Notification: Performance of sorting global known variables: time 0.0006303/0.1526, allocations: 0.8339 MB / 442.8 MB, free: 1.512 MB / 410.7 MB Notification: Performance of sort global known variables: time 8e-08/0.1526, allocations: 0 / 442.8 MB, free: 1.512 MB / 410.7 MB Notification: Performance of remove unused functions: time 0.00187/0.1545, allocations: 0.918 MB / 443.7 MB, free: 0.5938 MB / 410.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 1 (hemoglobinConservationLaw.state[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (45): * Single equations (assignments): 43 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 1 system {(6,53,86.1%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(10,49)} Notification: Performance of Backend phase and start with SimCode phase: time 0.0002079/0.1547, allocations: 123.2 kB / 443.8 MB, free: 476 kB / 410.7 MB Notification: Performance of simCode: created initialization part: time 0.1294/0.2842, allocations: 2.283 MB / 446.1 MB, free: 123.3 MB / 410.7 MB Notification: Performance of simCode: created event and clocks part: time 4.819e-06/0.2842, allocations: 0 / 446.1 MB, free: 123.3 MB / 410.7 MB Notification: Performance of simCode: created simulation system equations: time 0.003017/0.2872, allocations: 1.865 MB / 448 MB, free: 122.8 MB / 410.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001203/0.2884, allocations: 339.9 kB / 448.3 MB, free: 122.8 MB / 410.7 MB Error: Error parsing unit kcal/min: Unit not found Error: Error parsing unit kcal: Unit not found Error: Error parsing unit %: Parse error Error: Error parsing unit kcal/mol: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003765/0.2921, allocations: 3.354 MB / 451.7 MB, free: 121.4 MB / 410.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000319/0.2925, allocations: 0.4958 MB / 452.2 MB, free: 121.3 MB / 410.7 MB Notification: Performance of simCode: alias equations: time 0.000289/0.2927, allocations: 153.8 kB / 452.3 MB, free: 121.2 MB / 410.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003964/0.2931, allocations: 360.8 kB / 452.7 MB, free: 121.2 MB / 410.7 MB Notification: Performance of SimCode: time 8.11e-07/0.2931, allocations: 6.469 kB / 452.7 MB, free: 121.2 MB / 410.7 MB Notification: Performance of Templates: time 0.0611/0.3542, allocations: 73.96 MB / 0.5143 GB, free: 74.27 MB / 410.7 MB " [Timeout remaining time 660] make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.makefile [Timeout 660] (rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC -abortSlowSimulation -alarm=240 -lv LOG_STATS > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin_MWC.pipe 2>&1) [Timeout 240] [Calling os._exit(0), Time elapsed: 5.289757928811014]