Regular simulation: ./Chemical_Chemical.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=480 assert | warning | The following assertion has been violated at time 0.000000 | | | | solution.mass >= 0.0 and solution.mass <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= solution.mass <= 0.0, has value: 1.00022 assert | warning | The following assertion has been violated at time 0.000000 | | | | H2O.solution.nj >= 0.0 assert | warning | Variable violating min constraint: 0.0 <= H2O.solution.nj, has value: -0.000999161 assert | warning | The following assertion has been violated at time 0.000000 | | | | H2O.SelfClustering_K >= 0.0 and H2O.SelfClustering_K <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= H2O.SelfClustering_K <= 1.0, has value: 57.5423 assert | warning | The following assertion has been violated at time 0.000000 | | | | relaxed.speciation.subunitSolution.nj >= 0.0 assert | warning | Variable violating min constraint: 0.0 <= relaxed.speciation.subunitSolution.nj, has value: -5.79377e-07 assert | warning | The following assertion has been violated at time 0.000000 | | | | relaxed.solution.mj >= 0.0 and relaxed.solution.mj <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.solution.mj <= 0.0, has value: 1.04376e-08 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.speciation.xm >= 0.0 and tensed.speciation.xm <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.speciation.xm <= 1.0, has value: 966.26 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.speciation.subunitSolution.nj >= 0.0 assert | warning | Variable violating min constraint: 0.0 <= tensed.speciation.subunitSolution.nj, has value: -0.0119994 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.DeoxyHm[1].x >= 0.0 and tensed.DeoxyHm[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.DeoxyHm[1].x <= 1.0, has value: 965.413 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.DeoxyHm[2].x >= 0.0 and tensed.DeoxyHm[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.DeoxyHm[2].x <= 1.0, has value: 965.413 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.DeoxyHm[3].x >= 0.0 and tensed.DeoxyHm[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.DeoxyHm[3].x <= 1.0, has value: 965.413 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.DeoxyHm[4].x >= 0.0 and tensed.DeoxyHm[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.DeoxyHm[4].x <= 1.0, has value: 965.413 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.solution.mj >= 0.0 and tensed.solution.mj <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.solution.mj <= 0.0, has value: 0.000216173 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmAH[1].x >= 0.0 and tensed.HmAH[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmAH[1].x <= 1.0, has value: 653.483 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmAH[2].x >= 0.0 and tensed.HmAH[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmAH[2].x <= 1.0, has value: 653.483 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmAH[3].x >= 0.0 and tensed.HmAH[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmAH[3].x <= 1.0, has value: 653.483 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmAH[4].x >= 0.0 and tensed.HmAH[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmAH[4].x <= 1.0, has value: 653.483 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmA[1].x >= 0.0 and tensed.HmA[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmA[1].x <= 1.0, has value: 312.777 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmA[2].x >= 0.0 and tensed.HmA[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmA[2].x <= 1.0, has value: 312.777 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmA[3].x >= 0.0 and tensed.HmA[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmA[3].x <= 1.0, has value: 312.777 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmA[4].x >= 0.0 and tensed.HmA[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmA[4].x <= 1.0, has value: 312.777 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH3[1].x >= 0.0 and tensed.HmNH3[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH3[1].x <= 1.0, has value: 746.077 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH3[2].x >= 0.0 and tensed.HmNH3[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH3[2].x <= 1.0, has value: 746.077 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH3[3].x >= 0.0 and tensed.HmNH3[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH3[3].x <= 1.0, has value: 746.077 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH3[4].x >= 0.0 and tensed.HmNH3[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH3[4].x <= 1.0, has value: 746.077 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH2[1].x >= 0.0 and tensed.HmNH2[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH2[1].x <= 1.0, has value: 220.183 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH2[2].x >= 0.0 and tensed.HmNH2[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH2[2].x <= 1.0, has value: 220.183 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH2[3].x >= 0.0 and tensed.HmNH2[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH2[3].x <= 1.0, has value: 220.183 assert | warning | The following assertion has been violated at time 0.000000 | | | | tensed.HmNH2[4].x >= 0.0 and tensed.HmNH2[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNH2[4].x <= 1.0, has value: 220.183 assert | warning | The following assertion has been violated at time 0.000000 | | | | CO2_free.solution.n >= 0.0 and CO2_free.solution.n <= 0.0 assert | warning | Variable violating min/max constraint: 0.0 <= CO2_free.solution.n <= 0.0, has value: 1.03487e-06 LOG_SUCCESS | info | The initialization finished successfully without homotopy method. assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.OxyHm[1].x >= 0.0 and tensed.OxyHm[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.OxyHm[1].x <= 1.0, has value: 22.9994 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.OxyHm[2].x >= 0.0 and tensed.OxyHm[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.OxyHm[2].x <= 1.0, has value: 22.9994 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.OxyHm[3].x >= 0.0 and tensed.OxyHm[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.OxyHm[3].x <= 1.0, has value: 22.9994 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.OxyHm[4].x >= 0.0 and tensed.OxyHm[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.OxyHm[4].x <= 1.0, has value: 22.9994 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.HmNHCOO[1].x >= 0.0 and tensed.HmNHCOO[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNHCOO[1].x <= 1.0, has value: 31.2577 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.HmNHCOO[2].x >= 0.0 and tensed.HmNHCOO[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNHCOO[2].x <= 1.0, has value: 31.2577 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.HmNHCOO[3].x >= 0.0 and tensed.HmNHCOO[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNHCOO[3].x <= 1.0, has value: 31.2577 assert | warning | The following assertion has been violated at time 3.000000 | | | | tensed.HmNHCOO[4].x >= 0.0 and tensed.HmNHCOO[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= tensed.HmNHCOO[4].x <= 1.0, has value: 31.2577 assert | warning | The following assertion has been violated at time 9.000000 | | | | relaxed.speciation.xm >= 0.0 and relaxed.speciation.xm <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.speciation.xm <= 1.0, has value: 1.04686 assert | warning | The following assertion has been violated at time 12.000000 | | | | relaxed.OxyHm[1].x >= 0.0 and relaxed.OxyHm[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.OxyHm[1].x <= 1.0, has value: 1.30626 assert | warning | The following assertion has been violated at time 12.000000 | | | | relaxed.OxyHm[2].x >= 0.0 and relaxed.OxyHm[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.OxyHm[2].x <= 1.0, has value: 1.30626 assert | warning | The following assertion has been violated at time 12.000000 | | | | relaxed.OxyHm[3].x >= 0.0 and relaxed.OxyHm[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.OxyHm[3].x <= 1.0, has value: 1.30626 assert | warning | The following assertion has been violated at time 12.000000 | | | | relaxed.OxyHm[4].x >= 0.0 and relaxed.OxyHm[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.OxyHm[4].x <= 1.0, has value: 1.30626 assert | warning | The following assertion has been violated at time 15.000000 | | | | relaxed.HmA[1].x >= 0.0 and relaxed.HmA[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmA[1].x <= 1.0, has value: 1.19042 assert | warning | The following assertion has been violated at time 15.000000 | | | | relaxed.HmA[2].x >= 0.0 and relaxed.HmA[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmA[2].x <= 1.0, has value: 1.19042 assert | warning | The following assertion has been violated at time 15.000000 | | | | relaxed.HmA[3].x >= 0.0 and relaxed.HmA[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmA[3].x <= 1.0, has value: 1.19042 assert | warning | The following assertion has been violated at time 15.000000 | | | | relaxed.HmA[4].x >= 0.0 and relaxed.HmA[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmA[4].x <= 1.0, has value: 1.19042 assert | warning | The following assertion has been violated at time 18.000000 | | | | relaxed.HmNH3[1].x >= 0.0 and relaxed.HmNH3[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH3[1].x <= 1.0, has value: 1.06621 assert | warning | The following assertion has been violated at time 18.000000 | | | | relaxed.HmNH3[2].x >= 0.0 and relaxed.HmNH3[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH3[2].x <= 1.0, has value: 1.06621 assert | warning | The following assertion has been violated at time 18.000000 | | | | relaxed.HmNH3[3].x >= 0.0 and relaxed.HmNH3[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH3[3].x <= 1.0, has value: 1.06621 assert | warning | The following assertion has been violated at time 18.000000 | | | | relaxed.HmNH3[4].x >= 0.0 and relaxed.HmNH3[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH3[4].x <= 1.0, has value: 1.06621 assert | warning | The following assertion has been violated at time 21.000000 | | | | relaxed.HmNH2[1].x >= 0.0 and relaxed.HmNH2[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH2[1].x <= 1.0, has value: 1.07608 assert | warning | The following assertion has been violated at time 21.000000 | | | | relaxed.HmNH2[2].x >= 0.0 and relaxed.HmNH2[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH2[2].x <= 1.0, has value: 1.07608 assert | warning | The following assertion has been violated at time 21.000000 | | | | relaxed.HmNH2[3].x >= 0.0 and relaxed.HmNH2[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH2[3].x <= 1.0, has value: 1.07608 assert | warning | The following assertion has been violated at time 21.000000 | | | | relaxed.HmNH2[4].x >= 0.0 and relaxed.HmNH2[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNH2[4].x <= 1.0, has value: 1.07608 assert | warning | The following assertion has been violated at time 33.000000 | | | | relaxed.HmAH[1].x >= 0.0 and relaxed.HmAH[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmAH[1].x <= 1.0, has value: 1.02866 assert | warning | The following assertion has been violated at time 33.000000 | | | | relaxed.HmAH[2].x >= 0.0 and relaxed.HmAH[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmAH[2].x <= 1.0, has value: 1.02866 assert | warning | The following assertion has been violated at time 33.000000 | | | | relaxed.HmAH[3].x >= 0.0 and relaxed.HmAH[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmAH[3].x <= 1.0, has value: 1.02866 assert | warning | The following assertion has been violated at time 33.000000 | | | | relaxed.HmAH[4].x >= 0.0 and relaxed.HmAH[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmAH[4].x <= 1.0, has value: 1.02866 assert | warning | The following assertion has been violated at time 783.000000 | | | | relaxed.HmNHCOO[1].x >= 0.0 and relaxed.HmNHCOO[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNHCOO[1].x <= 1.0, has value: 1.00263 assert | warning | The following assertion has been violated at time 783.000000 | | | | relaxed.HmNHCOO[2].x >= 0.0 and relaxed.HmNHCOO[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNHCOO[2].x <= 1.0, has value: 1.00263 assert | warning | The following assertion has been violated at time 783.000000 | | | | relaxed.HmNHCOO[3].x >= 0.0 and relaxed.HmNHCOO[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNHCOO[3].x <= 1.0, has value: 1.00263 assert | warning | The following assertion has been violated at time 783.000000 | | | | relaxed.HmNHCOO[4].x >= 0.0 and relaxed.HmNHCOO[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.HmNHCOO[4].x <= 1.0, has value: 1.00263 assert | warning | The following assertion has been violated at time 819.000000 | | | | relaxed.DeoxyHm[1].x >= 0.0 and relaxed.DeoxyHm[1].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.DeoxyHm[1].x <= 1.0, has value: 1.00037 assert | warning | The following assertion has been violated at time 819.000000 | | | | relaxed.DeoxyHm[2].x >= 0.0 and relaxed.DeoxyHm[2].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.DeoxyHm[2].x <= 1.0, has value: 1.00037 assert | warning | The following assertion has been violated at time 819.000000 | | | | relaxed.DeoxyHm[3].x >= 0.0 and relaxed.DeoxyHm[3].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.DeoxyHm[3].x <= 1.0, has value: 1.00037 assert | warning | The following assertion has been violated at time 819.000000 | | | | relaxed.DeoxyHm[4].x >= 0.0 and relaxed.DeoxyHm[4].x <= 1.0 assert | warning | Variable violating min/max constraint: 0.0 <= relaxed.DeoxyHm[4].x <= 1.0, has value: 1.00037 LOG_SUCCESS | info | The simulation finished successfully.