Running command: translateModel(Chemical.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.EnzymeKinetics") Notification: Performance of loadModel(Chemical): time 1.93/1.93, allocations: 215.4 MB / 227.5 MB, free: 356 kB / 186.7 MB Warning: Ignoring unknown experiment annotation option: __Dymola_Algorithm = "Dassl" Notification: Performance of FrontEnd - loaded program: time 2.965e-05/2.976e-05, allocations: 4 kB / 280.4 MB, free: 11.77 MB / 234.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08331/0.08336, allocations: 50.02 MB / 330.4 MB, free: 9.652 MB / 282.7 MB Notification: Performance of FrontEnd - scodeFlatten: time 0.36/0.4434, allocations: 87.68 MB / 418.1 MB, free: 10.01 MB / 346.7 MB Notification: Performance of FrontEnd - mkProgramGraph: time 0.0002056/0.4437, allocations: 72.09 kB / 418.2 MB, free: 9.973 MB / 346.7 MB [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:3528:7-3528:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System solution.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:2614:7-2614:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System P.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$P. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:2614:7-2614:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System S.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$S. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:2614:7-2614:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System liquidWater.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$liquidWater. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:2614:7-2614:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System E.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$E. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/Chemical 1.2.0/package.mo:2614:7-2614:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System ES.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$ES. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. Notification: Performance of FrontEnd - DAE generated: time 0.214/0.6576, allocations: 54.97 MB / 473.2 MB, free: 9.605 MB / 394.7 MB Notification: Performance of FrontEnd: time 2.623e-06/0.6577, allocations: 224 / 473.2 MB, free: 9.605 MB / 394.7 MB Notification: Performance of Transformations before backend: time 8.695e-05/0.6578, allocations: 35.94 kB / 473.2 MB, free: 9.57 MB / 394.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 305 * Number of variables: 305 Notification: Performance of Generate backend data structure: time 0.003871/0.6617, allocations: 1.716 MB / 474.9 MB, free: 7.805 MB / 394.7 MB Notification: Performance of prepare preOptimizeDAE: time 4.153e-05/0.6617, allocations: 8.031 kB / 474.9 MB, free: 7.797 MB / 394.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004066/0.6621, allocations: 174 kB / 475.1 MB, free: 7.625 MB / 394.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.003465/0.6656, allocations: 1.351 MB / 476.4 MB, free: 6.227 MB / 394.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000113/0.6658, allocations: 94.44 kB / 476.5 MB, free: 6.133 MB / 394.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003801/0.6662, allocations: 135.8 kB / 476.7 MB, free: 6 MB / 394.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.004586/0.6708, allocations: 1.829 MB / 478.5 MB, free: 4.129 MB / 394.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 4.645e-05/0.6708, allocations: 3.938 kB / 478.5 MB, free: 4.125 MB / 394.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002464/0.6711, allocations: 52 kB / 478.6 MB, free: 4.074 MB / 394.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.192e-05/0.6712, allocations: 28 kB / 478.6 MB, free: 4.047 MB / 394.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.007169/0.6784, allocations: 2.968 MB / 481.5 MB, free: 1.074 MB / 394.7 MB Warning: The model contains alias variables with conflicting start and/or nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0152/0.6936, allocations: 6.403 MB / 488 MB, free: 10.43 MB / 410.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.01733/0.7109, allocations: 5.377 MB / 493.3 MB, free: 4.938 MB / 410.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.002648/0.7136, allocations: 1.092 MB / 494.4 MB, free: 3.848 MB / 410.7 MB Notification: Performance of preOpt evalFunc (simulation): time 0.008494/0.7221, allocations: 6.402 MB / 0.4891 GB, free: 12.34 MB / 426.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.17e-05/0.7222, allocations: 52.56 kB / 0.4891 GB, free: 12.27 MB / 426.7 MB Notification: Performance of pre-optimization done (n=176): time 5.34e-06/0.7223, allocations: 0 / 0.4891 GB, free: 12.27 MB / 426.7 MB Notification: Performance of matching and sorting (n=226): time 0.02773/0.75, allocations: 8.151 MB / 0.4971 GB, free: 4.051 MB / 426.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 6.405e-05/0.7501, allocations: 77.41 kB / 0.4972 GB, free: 3.965 MB / 426.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001261/0.7514, allocations: 0.6261 MB / 0.4978 GB, free: 3.332 MB / 426.7 MB Notification: Performance of collectPreVariables (initialization): time 0.0003535/0.7518, allocations: 61.7 kB / 0.4978 GB, free: 3.266 MB / 426.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0004845/0.7523, allocations: 494.1 kB / 0.4983 GB, free: 2.773 MB / 426.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.0009134/0.7532, allocations: 0.7502 MB / 0.499 GB, free: 2.016 MB / 426.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000206/0.7534, allocations: 40 kB / 0.4991 GB, free: 1.977 MB / 426.7 MB Notification: Performance of setup shared object (initialization): time 0.0002422/0.7537, allocations: 385.9 kB / 0.4994 GB, free: 1.594 MB / 426.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002553/0.7562, allocations: 0.9725 MB / 0.5004 GB, free: 0.6211 MB / 426.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002836/0.7591, allocations: 1.178 MB / 0.5015 GB, free: 15.39 MB / 442.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.002926/0.762, allocations: 1.099 MB / 0.5026 GB, free: 14.29 MB / 442.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.287e-06/0.7621, allocations: 3.984 kB / 0.5026 GB, free: 14.29 MB / 442.7 MB Notification: Performance of matching and sorting (n=252) (initialization): time 0.01015/0.7722, allocations: 2.81 MB / 0.5054 GB, free: 11.46 MB / 442.7 MB Notification: Performance of prepare postOptimizeDAE: time 4.4e-05/0.7723, allocations: 8 kB / 0.5054 GB, free: 11.45 MB / 442.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.519e-05/0.7724, allocations: 4.562 kB / 0.5054 GB, free: 11.45 MB / 442.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.002375/0.7747, allocations: 326.1 kB / 0.5057 GB, free: 11.12 MB / 442.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.005022/0.7798, allocations: 491.3 kB / 0.5062 GB, free: 10.64 MB / 442.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2447/1.025, allocations: 10.29 MB / 0.5162 GB, free: 114.9 MB / 442.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001678/1.026, allocations: 73.11 kB / 0.5163 GB, free: 114.9 MB / 442.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003561/1.027, allocations: 132 kB / 0.5164 GB, free: 114.9 MB / 442.7 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 19 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (236): * Single equations (assignments): 228 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 5 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Equation system details: * Constant Jacobian: 0 * Linear Jacobian (size,density): 0 * Non-linear Jacobian: 5 {1,1,1,1,1} * Without analytic Jacobian: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(1,100.0%) 3} * Non-linear torn systems: 2 {1 10,1 3} Notification: Performance of prepare postOptimizeDAE: time 0.0005394/1.027, allocations: 211.9 kB / 0.5166 GB, free: 114.8 MB / 442.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003739/1.028, allocations: 146 kB / 0.5167 GB, free: 114.8 MB / 442.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.01047/1.038, allocations: 3.646 MB / 0.5203 GB, free: 114.7 MB / 442.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.148e-05/1.038, allocations: 24.5 kB / 0.5203 GB, free: 114.7 MB / 442.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.196e-05/1.038, allocations: 1.312 kB / 0.5203 GB, free: 114.7 MB / 442.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.175e-05/1.038, allocations: 15 kB / 0.5203 GB, free: 114.7 MB / 442.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.01341/1.052, allocations: 5.534 MB / 0.5257 GB, free: 114.2 MB / 442.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.669e-05/1.052, allocations: 9.531 kB / 0.5258 GB, free: 114.2 MB / 442.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002367/1.054, allocations: 439.1 kB / 0.5262 GB, free: 114.2 MB / 442.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.001403/1.055, allocations: 313.3 kB / 0.5265 GB, free: 114.1 MB / 442.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0002858/1.056, allocations: 86.02 kB / 0.5266 GB, free: 114.1 MB / 442.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.004101/1.06, allocations: 3.942 MB / 0.5304 GB, free: 111 MB / 442.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.068e-06/1.06, allocations: 4.375 kB / 0.5304 GB, free: 111 MB / 442.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.01041/1.07, allocations: 4.703 MB / 0.535 GB, free: 110.3 MB / 442.7 MB Notification: Performance of postOpt removeConstants (simulation): time 0.001366/1.072, allocations: 0.532 MB / 0.5355 GB, free: 110.1 MB / 442.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003775/1.072, allocations: 50.83 kB / 0.5356 GB, free: 110.1 MB / 442.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001144/1.073, allocations: 62.75 kB / 0.5356 GB, free: 110.1 MB / 442.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003853/1.074, allocations: 186.2 kB / 0.5358 GB, free: 110.1 MB / 442.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0003177/1.074, allocations: 123.5 kB / 0.5359 GB, free: 110.1 MB / 442.7 MB Notification: Performance of sorting global known variables: time 0.0008876/1.075, allocations: 498.9 kB / 0.5364 GB, free: 110 MB / 442.7 MB Notification: Performance of sort global known variables: time 8.47e-07/1.075, allocations: 4 kB / 0.5364 GB, free: 110 MB / 442.7 MB Notification: Performance of remove unused functions: time 0.003407/1.078, allocations: 1.081 MB / 0.5375 GB, free: 110 MB / 442.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 18 * Number of states: 7 (solution.T,solution.freeInternalEnergy,P.log10n,S.log10n,ES.log10n,E.log10n,liquidWater.log10n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (217): * Single equations (assignments): 214 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(1,100.0%) 3} * Non-linear torn systems: 2 {1 3,1 10} Notification: Performance of Backend phase and start with SimCode phase: time 0.002414/1.081, allocations: 1.183 MB / 0.5386 GB, free: 109.8 MB / 442.7 MB Notification: Performance of simCode: created initialization part: time 0.006481/1.087, allocations: 2.691 MB / 0.5412 GB, free: 109.6 MB / 442.7 MB Notification: Performance of simCode: created event and clocks part: time 6.029e-06/1.087, allocations: 3.719 kB / 0.5412 GB, free: 109.6 MB / 442.7 MB Notification: Performance of simCode: created simulation system equations: time 0.003141/1.091, allocations: 1.545 MB / 0.5428 GB, free: 109.4 MB / 442.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002419/1.093, allocations: 449.3 kB / 0.5432 GB, free: 109.3 MB / 442.7 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006017/1.099, allocations: 2.702 MB / 0.5458 GB, free: 108.7 MB / 442.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0008163/1.1, allocations: 1.252 MB / 0.547 GB, free: 108 MB / 442.7 MB Notification: Performance of simCode: alias equations: time 0.002944/1.103, allocations: 0.694 MB / 0.5477 GB, free: 107.9 MB / 442.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001035/1.104, allocations: 264.9 kB / 0.548 GB, free: 107.9 MB / 442.7 MB Notification: Performance of SimCode: time 2.59e-06/1.104, allocations: 0 / 0.548 GB, free: 107.9 MB / 442.7 MB Notification: Performance of Templates: time 0.07351/1.177, allocations: 37.3 MB / 0.5844 GB, free: 95.79 MB / 442.7 MB