Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package Chemical with version 1.4.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo) Running command: translateModel(Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") translateModel(Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo): time 0.1128/0.1128, allocations: 15.26 MB / 22.73 MB, free: 0.9531 MB / 18.57 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001309/0.001309, allocations: 185 kB / 27.52 MB, free: 6.109 MB / 24.77 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.366/1.366, allocations: 221.5 MB / 253.7 MB, free: 10.43 MB / 202.7 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0008195/0.0008195, allocations: 99.81 kB / 308.8 MB, free: 10.46 MB / 250.7 MB Notification: Performance of FrontEnd - loaded program: time 1.121e-05/1.122e-05, allocations: 3.219 kB / 369.6 MB, free: 53.98 MB / 298.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.07967/0.07969, allocations: 54.63 MB / 424.2 MB, free: 13.84 MB / 298.7 MB Notification: Performance of FrontEnd - scodeFlatten: time 0.3659/0.4457, allocations: 105.2 MB / 0.517 GB, free: 12.3 MB / 362.7 MB Notification: Performance of FrontEnd - mkProgramGraph: time 0.0001805/0.4459, allocations: 68.55 kB / 0.5171 GB, free: 12.3 MB / 362.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System solution.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System oxygen_in_air.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Sources.ExternalIdealGasSubstance$oxygen_in_air. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System oxygen_unbound.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$oxygen_unbound. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. Notification: Performance of FrontEnd - DAE generated: time 0.373/0.8189, allocations: 143.3 MB / 0.657 GB, free: 13.79 MB / 474.7 MB Notification: Performance of FrontEnd: time 5.079e-06/0.819, allocations: 7.984 kB / 0.657 GB, free: 13.79 MB / 474.7 MB Notification: Performance of Transformations before backend: time 0.0007754/0.8197, allocations: 115.9 kB / 0.6571 GB, free: 13.67 MB / 474.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 1226 * Number of variables: 1226 Notification: Performance of Generate backend data structure: time 0.02053/0.8403, allocations: 5.711 MB / 0.6627 GB, free: 7.891 MB / 474.7 MB Notification: Performance of prepare preOptimizeDAE: time 5.407e-05/0.8404, allocations: 16.02 kB / 0.6627 GB, free: 7.875 MB / 474.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.007137/0.8475, allocations: 1.498 MB / 0.6642 GB, free: 6.367 MB / 474.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.01211/0.8596, allocations: 4.61 MB / 0.6687 GB, free: 1.691 MB / 474.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0005928/0.8603, allocations: 0.5159 MB / 0.6692 GB, free: 1.105 MB / 474.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.001829/0.8621, allocations: 303.8 kB / 0.6695 GB, free: 0.8086 MB / 474.7 MB Notification: Performance of preOpt removeEqualFunctionCalls (simulation): time 0.2708/1.133, allocations: 18.68 MB / 0.6877 GB, free: 71.67 MB / 474.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.01908/1.152, allocations: 11.27 MB / 0.6987 GB, free: 71.33 MB / 474.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0001241/1.152, allocations: 3.844 kB / 0.6987 GB, free: 71.33 MB / 474.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0008481/1.153, allocations: 0 / 0.6987 GB, free: 71.33 MB / 474.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.048e-05/1.153, allocations: 119.5 kB / 0.6988 GB, free: 71.33 MB / 474.7 MB Warning: The model contains alias variables with conflicting start and/or nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05993/1.213, allocations: 41.03 MB / 0.7389 GB, free: 63.21 MB / 474.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.07368/1.287, allocations: 32.3 MB / 0.7704 GB, free: 52.97 MB / 474.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.008621/1.295, allocations: 7.716 MB / 0.778 GB, free: 46.16 MB / 474.7 MB Notification: Performance of preOpt evalFunc (simulation): time 0.001226/1.297, allocations: 0.6602 MB / 0.7786 GB, free: 45.65 MB / 474.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.532e-05/1.297, allocations: 102 kB / 0.7787 GB, free: 45.55 MB / 474.7 MB Notification: Performance of preOpt simplifyInStream (simulation): time 0.007056/1.304, allocations: 1.301 MB / 0.78 GB, free: 44.68 MB / 474.7 MB Notification: Performance of pre-optimization done (n=600): time 3.099e-05/1.304, allocations: 3.891 kB / 0.78 GB, free: 44.68 MB / 474.7 MB Notification: Performance of matching and sorting (n=744): time 0.1917/1.496, allocations: 69.18 MB / 0.8475 GB, free: 5.285 MB / 490.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 9.643e-05/1.496, allocations: 121 kB / 0.8477 GB, free: 5.152 MB / 490.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.004932/1.501, allocations: 3.326 MB / 0.8509 GB, free: 1.84 MB / 490.7 MB Notification: Performance of collectPreVariables (initialization): time 0.001387/1.502, allocations: 29.7 kB / 0.8509 GB, free: 1.805 MB / 490.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.001657/1.504, allocations: 1.937 MB / 0.8528 GB, free: 32 kB / 490.7 MB Notification: Performance of collectInitialBindings (initialization): time 0.2545/1.758, allocations: 2.402 MB / 0.8552 GB, free: 78.53 MB / 490.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0008109/1.759, allocations: 2.906 kB / 0.8552 GB, free: 78.53 MB / 490.7 MB Notification: Performance of setup shared object (initialization): time 0.0004051/1.76, allocations: 0.5677 MB / 0.8557 GB, free: 78.21 MB / 490.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.01353/1.773, allocations: 9.547 MB / 0.8651 GB, free: 78.2 MB / 490.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.01139/1.785, allocations: 10.28 MB / 0.8751 GB, free: 77.66 MB / 490.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.01801/1.803, allocations: 11.32 MB / 0.8861 GB, free: 77.46 MB / 490.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.228e-05/1.803, allocations: 3.312 kB / 0.8861 GB, free: 77.46 MB / 490.7 MB Notification: Performance of matching and sorting (n=852) (initialization): time 0.08097/1.884, allocations: 29.02 MB / 0.9145 GB, free: 76.8 MB / 490.7 MB Notification: Performance of prepare postOptimizeDAE: time 4.713e-05/1.884, allocations: 12.09 kB / 0.9145 GB, free: 76.8 MB / 490.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.238e-05/1.884, allocations: 19.36 kB / 0.9145 GB, free: 76.79 MB / 490.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.01036/1.894, allocations: 4.436 MB / 0.9189 GB, free: 76.75 MB / 490.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.008538/1.903, allocations: 1.768 MB / 0.9206 GB, free: 76.75 MB / 490.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.02952/1.932, allocations: 18.93 MB / 0.9391 GB, free: 70.52 MB / 490.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.02437/1.957, allocations: 1.898 MB / 0.9409 GB, free: 70.51 MB / 490.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.002922/1.96, allocations: 496.9 kB / 0.9414 GB, free: 70.46 MB / 490.7 MB Warning: Iteration variables with default zero start attribute in torn nonlinear equation system: DeoxyTHm[1].solution.n:DUMMY_STATE(flow=false min = 0.0 max = 0.0 unit = "mol" ) "Amount of the solution" type: Real [4] Warning: Iteration variables with default zero start attribute in torn nonlinear equation system: DeoxyTHm[1].solution.I:VARIABLE(flow=false min = 0.0 max = 0.0 unit = "1" ) "Mole fraction based ionic strength of the solution" type: Real [4] Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 61 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (760): * Single equations (assignments): 754 * Array equations: 2 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(9,100.0%) 4,(1,100.0%) 3} * Non-linear torn systems: 2 {1 38,1 3} Notification: Performance of prepare postOptimizeDAE: time 0.002674/1.962, allocations: 213.3 kB / 0.9416 GB, free: 70.35 MB / 490.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.001601/1.964, allocations: 485.8 kB / 0.9421 GB, free: 70.1 MB / 490.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0943/2.058, allocations: 35.99 MB / 0.9772 GB, free: 55.13 MB / 490.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.08281/2.141, allocations: 30.97 MB / 1.007 GB, free: 25.79 MB / 490.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.577e-05/2.141, allocations: 4 kB / 1.007 GB, free: 25.79 MB / 490.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003964/2.142, allocations: 39.84 kB / 1.007 GB, free: 25.75 MB / 490.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.4144/2.556, allocations: 75.4 MB / 1.081 GB, free: 69.77 MB / 490.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0001141/2.556, allocations: 23.16 kB / 1.081 GB, free: 69.77 MB / 490.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00815/2.564, allocations: 1.645 MB / 1.083 GB, free: 69.77 MB / 490.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.03629/2.601, allocations: 11.89 MB / 1.094 GB, free: 69.72 MB / 490.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.002001/2.603, allocations: 259.7 kB / 1.095 GB, free: 69.72 MB / 490.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.07349/2.676, allocations: 48.67 MB / 1.142 GB, free: 59.48 MB / 490.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 0.008073/2.684, allocations: 4.466 MB / 1.146 GB, free: 57.18 MB / 490.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0986/2.783, allocations: 49.02 MB / 1.194 GB, free: 12.43 MB / 490.7 MB Notification: Performance of postOpt removeConstants (simulation): time 0.006222/2.789, allocations: 2.297 MB / 1.197 GB, free: 10.13 MB / 490.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.002408/2.792, allocations: 45.83 kB / 1.197 GB, free: 10.09 MB / 490.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01488/2.807, allocations: 0.9753 MB / 1.198 GB, free: 9.121 MB / 490.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.002502/2.809, allocations: 0.9013 MB / 1.198 GB, free: 8.238 MB / 490.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0009219/2.81, allocations: 407.4 kB / 1.199 GB, free: 7.84 MB / 490.7 MB Notification: Performance of sorting global known variables: time 0.003046/2.813, allocations: 2.597 MB / 1.201 GB, free: 5.254 MB / 490.7 MB Notification: Performance of sort global known variables: time 2.4e-07/2.813, allocations: 0 / 1.201 GB, free: 5.254 MB / 490.7 MB Notification: Performance of remove unused functions: time 0.02383/2.837, allocations: 7.767 MB / 1.209 GB, free: 13.7 MB / 0.4948 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 101 * Number of states: 19 ($STATESET1.x[19],$STATESET1.x[18],$STATESET1.x[17],$STATESET1.x[16],$STATESET1.x[15],$STATESET1.x[14],$STATESET1.x[13],$STATESET1.x[12],$STATESET1.x[11],$STATESET1.x[10],$STATESET1.x[9],$STATESET1.x[8],$STATESET1.x[7],$STATESET1.x[6],$STATESET1.x[5],$STATESET1.x[4],$STATESET1.x[3],$STATESET1.x[2],$STATESET1.x[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (773): * Single equations (assignments): 769 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(9,100.0%) 4,(1,100.0%) 3} * Non-linear torn systems: 2 {1 38,20 27} Notification: Performance of Backend phase and start with SimCode phase: time 0.005046/2.842, allocations: 1.451 MB / 1.21 GB, free: 12.64 MB / 0.4948 GB Notification: Performance of simCode: created initialization part: time 0.3359/3.178, allocations: 21.74 MB / 1.232 GB, free: 92.82 MB / 0.4948 GB Notification: Performance of simCode: created event and clocks part: time 2.983e-05/3.178, allocations: 3.75 kB / 1.232 GB, free: 92.82 MB / 0.4948 GB Notification: Performance of simCode: created simulation system equations: time 0.0315/3.21, allocations: 16.94 MB / 1.248 GB, free: 92.39 MB / 0.4948 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.01094/3.221, allocations: 1.574 MB / 1.25 GB, free: 92.32 MB / 0.4948 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.03089/3.252, allocations: 19.59 MB / 1.269 GB, free: 89.17 MB / 0.4948 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.00438/3.256, allocations: 4.583 MB / 1.273 GB, free: 88.29 MB / 0.4948 GB Notification: Performance of simCode: alias equations: time 0.009631/3.266, allocations: 2.752 MB / 1.276 GB, free: 88.14 MB / 0.4948 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.004181/3.27, allocations: 0.8298 MB / 1.277 GB, free: 88.14 MB / 0.4948 GB Notification: Performance of SimCode: time 1.002e-06/3.27, allocations: 0 / 1.277 GB, free: 88.14 MB / 0.4948 GB Notification: Performance of Templates: time 0.5874/3.857, allocations: 184.6 MB / 1.457 GB, free: 76.18 MB / 0.4948 GB make -j1 -f Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile (rm -f Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1)