Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GMO.cell.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.GMO.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GMO.cell")
translateModel(BioChem.Examples.GMO.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GMO.cell")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001304/0.001304, allocations: 115.3 kB / 16.42 MB, free: 6.375 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001674/0.001674, allocations: 195.3 kB / 17.35 MB, free: 5.828 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.348/1.348, allocations: 222.9 MB / 241 MB, free: 15.17 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.1135/0.1135, allocations: 12.28 MB / 303.5 MB, free: 3.23 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - Absyn->SCode: time 2.988e-05/2.989e-05, allocations: 2.281 kB / 420.7 MB, free: 17.09 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.GMO.cell): time 0.00533/0.005369, allocations: 4.317 MB / 425 MB, free: 12.77 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0003124/0.005708, allocations: 298.3 kB / 425.3 MB, free: 12.48 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001166/0.005832, allocations: 19.94 kB / 425.3 MB, free: 12.46 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001042/0.005944, allocations: 48.92 kB / 425.3 MB, free: 12.42 MB / 302.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.0001957/0.006146, allocations: 80.73 kB / 425.4 MB, free: 12.34 MB / 302.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0002179/0.00637, allocations: 63.91 kB / 425.5 MB, free: 12.28 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0002759/0.006711, allocations: 348 kB / 425.8 MB, free: 11.94 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003218/0.007041, allocations: 172.5 kB / 426 MB, free: 11.77 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00011/0.007164, allocations: 135.5 kB / 426.1 MB, free: 11.64 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001513/0.007322, allocations: 155.3 kB / 426.3 MB, free: 11.49 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 4.552e-05/0.007373, allocations: 32 kB / 426.3 MB, free: 11.46 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 4.664e-05/0.007426, allocations: 36 kB / 426.3 MB, free: 11.42 MB / 302.1 MB
Notification: Performance of combineBinaries: time 0.0002969/0.007728, allocations: 0.4982 MB / 426.8 MB, free: 10.92 MB / 302.1 MB
Notification: Performance of replaceArrayConstructors: time 0.0001067/0.007841, allocations: 319.1 kB / 427.1 MB, free: 10.6 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 4.843e-05/0.007896, allocations: 59.75 kB / 427.2 MB, free: 10.54 MB / 302.1 MB
Notification: Performance of FrontEnd: time 4.594e-05/0.007947, allocations: 8 kB / 427.2 MB, free: 10.54 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 96 (96)
 * Number of variables: 96 (96)
Notification: Performance of Bindings: time 0.00113/0.009082, allocations: 1.618 MB / 428.8 MB, free: 8.805 MB / 302.1 MB
Notification: Performance of FunctionAlias: time 5.941e-05/0.009151, allocations: 71.86 kB / 428.9 MB, free: 8.734 MB / 302.1 MB
Notification: Performance of Early Inline: time 0.0005847/0.009743, allocations: 0.8742 MB / 429.8 MB, free: 7.832 MB / 302.1 MB
Notification: Performance of simplify1: time 6.64e-05/0.009817, allocations: 79.91 kB / 429.8 MB, free: 7.754 MB / 302.1 MB
Notification: Performance of Alias: time 0.001913/0.01174, allocations: 2.067 MB / 431.9 MB, free: 5.457 MB / 302.1 MB
Notification: Performance of simplify2: time 3.56e-05/0.01179, allocations: 39.95 kB / 432 MB, free: 5.418 MB / 302.1 MB
Notification: Performance of Detect States: time 0.0002319/0.01202, allocations: 175.1 kB / 432.1 MB, free: 5.23 MB / 302.1 MB
Notification: Performance of Events: time 4.274e-05/0.01207, allocations: 31.97 kB / 432.2 MB, free: 5.199 MB / 302.1 MB
Notification: Performance of Partitioning: time 0.0001968/0.01228, allocations: 212.3 kB / 432.4 MB, free: 4.988 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0007164/0.013, allocations: 0.7699 MB / 433.1 MB, free: 4.207 MB / 302.1 MB
Notification: Performance of After Index Reduction Inline: time 0.0002801/0.01329, allocations: 415.5 kB / 433.5 MB, free: 3.773 MB / 302.1 MB
Notification: Performance of Inline: time 0.0004434/0.01374, allocations: 0.6315 MB / 434.2 MB, free: 3.109 MB / 302.1 MB
Notification: Performance of Partitioning: time 3.781e-05/0.01379, allocations: 42.38 kB / 434.2 MB, free: 3.059 MB / 302.1 MB
Notification: Performance of Cleanup: time 2.333e-05/0.01382, allocations: 27.97 kB / 434.2 MB, free: 3.031 MB / 302.1 MB
Notification: Performance of Causalize: time 0.001534/0.01536, allocations: 1.671 MB / 435.9 MB, free: 1.348 MB / 302.1 MB
Notification: Performance of Tearing: time 1.517e-05/0.01538, allocations: 0 / 435.9 MB, free: 1.348 MB / 302.1 MB
Notification: Performance of Initialization: time 3.11e-07/0.01539, allocations: 0 / 435.9 MB, free: 1.348 MB / 302.1 MB
Notification: Performance of Tearing: time 2.785e-06/0.0154, allocations: 4 kB / 435.9 MB, free: 1.344 MB / 302.1 MB
Notification: Performance of Categorize: time 1.009e-05/0.01541, allocations: 0 / 435.9 MB, free: 1.344 MB / 302.1 MB
Notification: Performance of Solve: time 0.0004106/0.01583, allocations: 477.1 kB / 436.4 MB, free: 0.8281 MB / 302.1 MB
Notification: Performance of Jacobian: time 0.0002636/0.0161, allocations: 439.7 kB / 436.8 MB, free: 372 kB / 302.1 MB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 5 (5) {C.n, M.n, X.n, ambientSubstance.n, cell_V}
 * Number of discrete states: .................... 0 (0) {}
 * Number of clocked states: ..................... 0 (0) {NOT YET AVAILABLE}
 * Number of discrete variables: ................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 36 (scalar:36, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 40 (scalar:40, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 1 (linear: 0, nonlinear:1)
Notification: Performance of backend: time 4.938e-05/0.01616, allocations: 27.17 kB / 436.8 MB, free: 356 kB / 302.1 MB
Notification: Performance of SimCode: time 0.001274/0.01744, allocations: 1.517 MB / 438.4 MB, free: 14.81 MB / 318.1 MB
Notification: Performance of Templates: time 0.004508/0.02196, allocations: 1.593 MB / 439.9 MB, free: 13.21 MB / 318.1 MB
make -j1 -f BioChem_BioChem.Examples.GMO.cell.makefile
(rm -f BioChem_BioChem.Examples.GMO.cell.pipe ; mkfifo BioChem_BioChem.Examples.GMO.cell.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GMO.cell.pipe >> ../files/BioChem_BioChem.Examples.GMO.cell.sim & ./BioChem_BioChem.Examples.GMO.cell  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.GMO.cell.pipe 2>&1)