Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.CaOscillations.Cytosol.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001271/0.001271, allocations: 114.3 kB / 16.43 MB, free: 6.055 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001095/0.001095, allocations: 196.7 kB / 17.36 MB, free: 5.617 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.406/1.406, allocations: 222.9 MB / 241 MB, free: 15.16 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.05948/0.05948, allocations: 12.27 MB / 303.5 MB, free: 3.238 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - Absyn->SCode: time 2.622e-05/2.623e-05, allocations: 2.281 kB / 420.7 MB, free: 17.08 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CaOscillations.Cytosol): time 0.00338/0.003414, allocations: 2.813 MB / 423.5 MB, free: 14.26 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0001972/0.003628, allocations: 190.4 kB / 423.7 MB, free: 14.08 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 8.238e-05/0.003719, allocations: 8 kB / 423.7 MB, free: 14.07 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 6.584e-05/0.00379, allocations: 35.67 kB / 423.7 MB, free: 14.04 MB / 302.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.0001295/0.003925, allocations: 40.73 kB / 423.7 MB, free: 14 MB / 302.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0001807/0.004126, allocations: 53.58 kB / 423.8 MB, free: 13.95 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0001713/0.004305, allocations: 213.3 kB / 424 MB, free: 13.74 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002316/0.004543, allocations: 122 kB / 424.1 MB, free: 13.61 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 6.69e-05/0.004617, allocations: 79.66 kB / 424.2 MB, free: 13.54 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001044/0.004728, allocations: 96.3 kB / 424.3 MB, free: 13.44 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 3.285e-05/0.004766, allocations: 23.94 kB / 424.3 MB, free: 13.42 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 2.85e-05/0.004801, allocations: 24.59 kB / 424.3 MB, free: 13.39 MB / 302.1 MB
Notification: Performance of combineBinaries: time 0.0001641/0.004978, allocations: 345.4 kB / 424.7 MB, free: 13.05 MB / 302.1 MB
Notification: Performance of replaceArrayConstructors: time 6.514e-05/0.005049, allocations: 208.8 kB / 424.9 MB, free: 12.85 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 3.324e-05/0.005087, allocations: 35.88 kB / 424.9 MB, free: 12.81 MB / 302.1 MB
Notification: Performance of FrontEnd: time 2.757e-05/0.005119, allocations: 7.938 kB / 424.9 MB, free: 12.8 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 60 (60)
 * Number of variables: 60 (60)
Notification: Performance of Bindings: time 0.0007352/0.00586, allocations: 1.119 MB / 426 MB, free: 11.59 MB / 302.1 MB
Notification: Performance of FunctionAlias: time 8.429e-05/0.005952, allocations: 63.89 kB / 426.1 MB, free: 11.53 MB / 302.1 MB
Notification: Performance of Early Inline: time 0.0003597/0.006318, allocations: 0.5854 MB / 426.7 MB, free: 10.91 MB / 302.1 MB
Notification: Performance of simplify1: time 4.187e-05/0.006365, allocations: 51.94 kB / 426.7 MB, free: 10.86 MB / 302.1 MB
Notification: Performance of Alias: time 0.001345/0.007716, allocations: 1.436 MB / 428.2 MB, free: 9.262 MB / 302.1 MB
Notification: Performance of simplify2: time 2.316e-05/0.00775, allocations: 27.97 kB / 428.2 MB, free: 9.234 MB / 302.1 MB
Notification: Performance of Detect States: time 0.000176/0.007933, allocations: 138 kB / 428.3 MB, free: 9.086 MB / 302.1 MB
Notification: Performance of Events: time 2.97e-05/0.007971, allocations: 35.92 kB / 428.4 MB, free: 9.051 MB / 302.1 MB
Notification: Performance of Partitioning: time 0.0001149/0.008092, allocations: 117.6 kB / 428.5 MB, free: 8.93 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0004013/0.008499, allocations: 461.8 kB / 428.9 MB, free: 8.469 MB / 302.1 MB
Notification: Performance of After Index Reduction Inline: time 0.0001629/0.008669, allocations: 264.2 kB / 429.2 MB, free: 8.184 MB / 302.1 MB
Notification: Performance of Inline: time 0.0003233/0.009, allocations: 436.2 kB / 429.6 MB, free: 7.723 MB / 302.1 MB
Notification: Performance of Partitioning: time 2.409e-05/0.009033, allocations: 36.05 kB / 429.7 MB, free: 7.68 MB / 302.1 MB
Notification: Performance of Cleanup: time 2.043e-05/0.009058, allocations: 19.98 kB / 429.7 MB, free: 7.66 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0009212/0.009984, allocations: 1.037 MB / 430.7 MB, free: 6.625 MB / 302.1 MB
Notification: Performance of Tearing: time 1.363e-05/0.01001, allocations: 3.938 kB / 430.7 MB, free: 6.621 MB / 302.1 MB
Notification: Performance of Initialization: time 3.21e-07/0.01001, allocations: 0 / 430.7 MB, free: 6.621 MB / 302.1 MB
Notification: Performance of Tearing: time 2.053e-06/0.01002, allocations: 0 / 430.7 MB, free: 6.621 MB / 302.1 MB
Notification: Performance of Categorize: time 8.857e-06/0.01003, allocations: 4 kB / 430.7 MB, free: 6.617 MB / 302.1 MB
Notification: Performance of Solve: time 0.0004541/0.01049, allocations: 1.09 MB / 431.8 MB, free: 5.375 MB / 302.1 MB
Notification: Performance of Jacobian: time 0.0001778/0.01068, allocations: 349.9 kB / 432.2 MB, free: 4.996 MB / 302.1 MB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 5 (5) {endoplasmicReticulum.CaER.n, endoplasmicReticulum.Endoplasmic_Reticulum_V, Ca_Cyt.n, p3_sbml, Cytosol_V}
 * Number of discrete states: .................... 0 (0) {}
 * Number of clocked states: ..................... 0 (0) {NOT YET AVAILABLE}
 * Number of discrete variables: ................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 22 (scalar:22, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 25 (scalar:25, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 3 (linear: 0, nonlinear:3)
Notification: Performance of backend: time 4.781e-05/0.01073, allocations: 34.34 kB / 432.2 MB, free: 4.965 MB / 302.1 MB
Notification: Performance of SimCode: time 0.0007369/0.01147, allocations: 1.313 MB / 433.5 MB, free: 3.629 MB / 302.1 MB
Notification: Performance of Templates: time 0.00348/0.01496, allocations: 1.261 MB / 434.8 MB, free: 2.367 MB / 302.1 MB
make -j1 -f BioChem_BioChem.Examples.CaOscillations.Cytosol.makefile
(rm -f BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; mkfifo BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe >> ../files/BioChem_BioChem.Examples.CaOscillations.Cytosol.sim & ./BioChem_BioChem.Examples.CaOscillations.Cytosol  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe 2>&1)