Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.CellDivison.cell.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001397/0.001397, allocations: 110.4 kB / 16.42 MB, free: 6.512 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001547/0.001547, allocations: 185.5 kB / 17.35 MB, free: 5.738 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.315/1.315, allocations: 222.9 MB / 241 MB, free: 15.17 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.06339/0.06339, allocations: 12.27 MB / 303.5 MB, free: 3.242 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.001207/0.001207, allocations: 68.2 kB / 420.7 MB, free: 17.03 MB / 302.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.08257/0.08379, allocations: 52.07 MB / 472.8 MB, free: 12.96 MB / 350.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CellDivison.cell): time 0.007395/0.09122, allocations: 5.794 MB / 478.6 MB, free: 7.145 MB / 350.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0005514/0.0918, allocations: 466.8 kB / 479.1 MB, free: 6.688 MB / 350.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001308/0.09194, allocations: 24 kB / 479.1 MB, free: 6.664 MB / 350.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.000134/0.09208, allocations: 79.34 kB / 479.2 MB, free: 6.586 MB / 350.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.000232/0.09234, allocations: 118.8 kB / 479.3 MB, free: 6.469 MB / 350.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0002382/0.09258, allocations: 107.8 kB / 479.4 MB, free: 6.363 MB / 350.1 MB
Notification: Performance of NFFlatten.flatten: time 0.00038/0.09297, allocations: 458.7 kB / 479.8 MB, free: 5.914 MB / 350.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003502/0.09333, allocations: 237.9 kB / 480.1 MB, free: 5.672 MB / 350.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001551/0.09349, allocations: 191.4 kB / 480.2 MB, free: 5.484 MB / 350.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002249/0.09372, allocations: 227 kB / 480.5 MB, free: 5.262 MB / 350.1 MB
Notification: Performance of NFPackage.collectConstants: time 5.978e-05/0.09379, allocations: 52 kB / 480.5 MB, free: 5.211 MB / 350.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 7.251e-05/0.09387, allocations: 48 kB / 480.6 MB, free: 5.164 MB / 350.1 MB
Notification: Performance of NFScalarize.scalarize: time 7.586e-05/0.09395, allocations: 111.6 kB / 480.7 MB, free: 5.055 MB / 350.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001824/0.09414, allocations: 238.9 kB / 480.9 MB, free: 4.82 MB / 350.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0004328/0.09458, allocations: 0.5332 MB / 481.4 MB, free: 4.285 MB / 350.1 MB
Notification: Performance of FrontEnd - DAE generated: time 3.988e-06/0.09459, allocations: 0 / 481.4 MB, free: 4.285 MB / 350.1 MB
Notification: Performance of FrontEnd: time 1.283e-06/0.09459, allocations: 0 / 481.4 MB, free: 4.285 MB / 350.1 MB
Notification: Performance of Transformations before backend: time 8.045e-06/0.09461, allocations: 0 / 481.4 MB, free: 4.285 MB / 350.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 148
 * Number of variables: 148
Notification: Performance of Generate backend data structure: time 0.0009259/0.09554, allocations: 0.7337 MB / 482.2 MB, free: 3.5 MB / 350.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.531e-05/0.09558, allocations: 8.031 kB / 482.2 MB, free: 3.492 MB / 350.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 8.166e-05/0.09567, allocations: 52.38 kB / 482.2 MB, free: 3.441 MB / 350.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001347/0.09581, allocations: 215.7 kB / 482.4 MB, free: 3.191 MB / 350.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.559e-05/0.09585, allocations: 41.69 kB / 482.5 MB, free: 3.152 MB / 350.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 8.099e-05/0.09594, allocations: 60.31 kB / 482.5 MB, free: 3.094 MB / 350.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007491/0.09669, allocations: 0.5158 MB / 483.1 MB, free: 2.562 MB / 350.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.84e-05/0.09672, allocations: 8.125 kB / 483.1 MB, free: 2.555 MB / 350.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.318e-05/0.09677, allocations: 27.92 kB / 483.1 MB, free: 2.527 MB / 350.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.413e-05/0.09679, allocations: 16 kB / 483.1 MB, free: 2.512 MB / 350.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005485/0.09735, allocations: 361.1 kB / 483.5 MB, free: 2.16 MB / 350.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002222/0.09958, allocations: 1.583 MB / 485 MB, free: 0.5156 MB / 350.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004714/0.1001, allocations: 290.3 kB / 485.3 MB, free: 228 kB / 350.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000229/0.1003, allocations: 184.8 kB / 485.5 MB, free: 40 kB / 350.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.841e-05/0.1003, allocations: 4 kB / 485.5 MB, free: 36 kB / 350.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.429e-05/0.1004, allocations: 38.61 kB / 485.5 MB, free: 15.98 MB / 366.1 MB
Notification: Performance of pre-optimization done (n=35): time 1.844e-06/0.1004, allocations: 4 kB / 485.6 MB, free: 15.98 MB / 366.1 MB
Notification: Performance of matching and sorting (n=42): time 0.003226/0.1036, allocations: 1.417 MB / 487 MB, free: 14.52 MB / 366.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.555e-05/0.1036, allocations: 55.41 kB / 487 MB, free: 14.45 MB / 366.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001507/0.1038, allocations: 191.9 kB / 487.2 MB, free: 14.25 MB / 366.1 MB
Notification: Performance of collectPreVariables (initialization): time 2.623e-05/0.1038, allocations: 33.7 kB / 487.2 MB, free: 14.21 MB / 366.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001301/0.104, allocations: 271.5 kB / 487.5 MB, free: 13.94 MB / 366.1 MB
Notification: Performance of collectInitialBindings (initialization): time 9.958e-05/0.1041, allocations: 157.7 kB / 487.7 MB, free: 13.78 MB / 366.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001142/0.1042, allocations: 98.16 kB / 487.8 MB, free: 13.68 MB / 366.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001049/0.1043, allocations: 338.8 kB / 488.1 MB, free: 13.34 MB / 366.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001956/0.1045, allocations: 133.2 kB / 488.2 MB, free: 13.21 MB / 366.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000302/0.1048, allocations: 315.5 kB / 488.5 MB, free: 12.83 MB / 366.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.003629/0.1085, allocations: 1.15 MB / 489.7 MB, free: 11.6 MB / 366.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.625e-06/0.1085, allocations: 0 / 489.7 MB, free: 11.6 MB / 366.1 MB
Notification: Performance of matching and sorting (n=74) (initialization): time 0.0007352/0.1092, allocations: 0.5156 MB / 490.2 MB, free: 11.08 MB / 366.1 MB
Notification: Performance of prepare postOptimizeDAE: time 1.948e-05/0.1092, allocations: 8.094 kB / 490.2 MB, free: 11.07 MB / 366.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.707e-06/0.1093, allocations: 11.94 kB / 490.2 MB, free: 11.06 MB / 366.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 2.052e-05/0.1093, allocations: 11.94 kB / 490.2 MB, free: 11.05 MB / 366.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000498/0.1098, allocations: 135.8 kB / 490.4 MB, free: 10.91 MB / 366.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.433e-05/0.1098, allocations: 11.94 kB / 490.4 MB, free: 10.9 MB / 366.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002102/0.11, allocations: 23.91 kB / 490.4 MB, free: 10.88 MB / 366.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.038e-05/0.1101, allocations: 24 kB / 490.4 MB, free: 10.86 MB / 366.1 MB
Warning: Assuming fixed start value for the following 8 variables:
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         EmptySet.c:VARIABLE(min = 0.0 start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         YP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         Y.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         pM.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         M.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         CP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         C2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 25
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (74):
 * Single equations (assignments): 74
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002886/0.1104, allocations: 204.2 kB / 490.6 MB, free: 10.64 MB / 366.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.306e-05/0.1104, allocations: 23.72 kB / 490.6 MB, free: 10.62 MB / 366.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001078/0.1105, allocations: 42.94 kB / 490.7 MB, free: 10.58 MB / 366.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.033e-06/0.1105, allocations: 15.86 kB / 490.7 MB, free: 10.56 MB / 366.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.443e-06/0.1106, allocations: 0 / 490.7 MB, free: 10.56 MB / 366.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 4.943e-05/0.1106, allocations: 92.83 kB / 490.8 MB, free: 10.45 MB / 366.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.325e-05/0.1107, allocations: 8 kB / 490.8 MB, free: 10.45 MB / 366.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001859/0.1109, allocations: 8 kB / 490.8 MB, free: 10.44 MB / 366.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 4.948e-05/0.1109, allocations: 23.95 kB / 490.8 MB, free: 10.41 MB / 366.1 MB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0009054/0.1118, allocations: 460.4 kB / 491.3 MB, free: 9.957 MB / 366.1 MB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0007557/0.1126, allocations: 0.6518 MB / 491.9 MB, free: 9.285 MB / 366.1 MB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001956/0.1128, allocations: 144.4 kB / 492.1 MB, free: 9.145 MB / 366.1 MB
Notification: Performance of sorting global known variables: time 8.575e-05/0.1129, allocations: 120.1 kB / 492.2 MB, free: 9.027 MB / 366.1 MB
Notification: Performance of Backend: time 4.31e-07/0.1129, allocations: 4 kB / 492.2 MB, free: 9.023 MB / 366.1 MB
Notification: Performance of simCode: created initialization part: time 0.0006652/0.1136, allocations: 355.9 kB / 492.5 MB, free: 8.676 MB / 366.1 MB
Notification: Performance of SimCode: time 0.001453/0.115, allocations: 1.433 MB / 494 MB, free: 7.195 MB / 366.1 MB
Notification: Performance of Templates: time 0.006275/0.1213, allocations: 3.258 MB / 497.2 MB, free: 3.934 MB / 366.1 MB
make -j1 -f BioChem_BioChem.Examples.CellDivison.cell.makefile
(rm -f BioChem_BioChem.Examples.CellDivison.cell.pipe ; mkfifo BioChem_BioChem.Examples.CellDivison.cell.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CellDivison.cell.pipe >> ../files/BioChem_BioChem.Examples.CellDivison.cell.sim & ./BioChem_BioChem.Examples.CellDivison.cell  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CellDivison.cell.pipe 2>&1)