Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001255/0.001255, allocations: 113.8 kB / 17.6 MB, free: 4.703 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001269/0.001269, allocations: 190 kB / 20.78 MB, free: 1.543 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.441/1.441, allocations: 225.6 MB / 249.4 MB, free: 3.16 MB / 190.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo): time 0.1218/0.1218, allocations: 15.55 MB / 320 MB, free: 13.11 MB / 254.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 1.4.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 0.001993/0.001993, allocations: 67.95 kB / 448.2 MB, free: 46.43 MB / 366.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1243/0.1263, allocations: 56.55 MB / 0.493 GB, free: 19.11 MB / 366.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4740:7-4740:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1-master/package.mo:4740:7-4740:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.Hemoglobin.Joels57): time 0.09775/0.224, allocations: 83.3 MB / 0.5743 GB, free: 1.727 MB / 430.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5805/0.8046, allocations: 217.8 MB / 0.787 GB, free: 15.8 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01625/0.8208, allocations: 171.1 kB / 0.7872 GB, free: 15.63 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01991/0.8407, allocations: 4.912 MB / 0.792 GB, free: 10.69 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.07366/0.9144, allocations: 17.76 MB / 0.8093 GB, free: 8.805 MB / 0.5762 GB
Notification: Performance of NFTyping.typeClassSections: time 0.574/1.488, allocations: 32.35 MB / 0.8409 GB, free: 11.05 MB / 0.5919 GB
Notification: Performance of NFFlatten.flatten: time 0.1032/1.592, allocations: 89.52 MB / 0.9283 GB, free: 12.66 MB / 0.6075 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.1119/1.703, allocations: 52.3 MB / 0.9794 GB, free: 15.86 MB / 0.6544 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.1564/1.86, allocations: 55.88 MB / 1.034 GB, free: 9.035 MB / 0.7012 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.121/1.981, allocations: 52.02 MB / 1.085 GB, free: 6.676 MB / 0.7481 GB
Notification: Performance of NFPackage.collectConstants: time 0.9294/2.91, allocations: 12.21 MB / 1.097 GB, free: 79.71 MB / 0.7482 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1192/3.03, allocations: 35.43 MB / 1.131 GB, free: 79.71 MB / 0.7482 GB
Notification: Performance of NFScalarize.scalarize: time 0.04802/3.078, allocations: 24.02 MB / 1.155 GB, free: 79.71 MB / 0.7482 GB
Notification: Performance of NFVerifyModel.verify: time 0.08755/3.165, allocations: 40.57 MB / 1.194 GB, free: 75.8 MB / 0.7482 GB
Notification: Performance of NFConvertDAE.convert: time 0.2222/3.387, allocations: 149.7 MB / 1.341 GB, free: 15.98 MB / 0.795 GB
Notification: Performance of FrontEnd - DAE generated: time 9.258e-06/3.387, allocations: 0 / 1.341 GB, free: 15.98 MB / 0.795 GB
Notification: Performance of FrontEnd: time 1.764e-06/3.387, allocations: 0 / 1.341 GB, free: 15.98 MB / 0.795 GB
Notification: Performance of Transformations before backend: time 0.00398/3.391, allocations: 0 / 1.341 GB, free: 15.98 MB / 0.795 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 1.013/4.405, allocations: 71.78 MB / 1.411 GB, free: 266.5 MB / 0.8108 GB
Notification: Performance of prepare preOptimizeDAE: time 4.082e-05/4.405, allocations: 13.41 kB / 1.411 GB, free: 266.5 MB / 0.8108 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.07978/4.485, allocations: 11.93 MB / 1.422 GB, free: 262.8 MB / 0.8108 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0985/4.583, allocations: 41.02 MB / 1.462 GB, free: 245.1 MB / 0.8108 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.006494/4.59, allocations: 6.429 MB / 1.469 GB, free: 240 MB / 0.8108 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03375/4.623, allocations: 4.601 MB / 1.473 GB, free: 238.4 MB / 0.8108 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.2955/4.919, allocations: 112.8 MB / 1.583 GB, free: 126.1 MB / 0.8108 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002371/4.921, allocations: 27.69 kB / 1.583 GB, free: 126 MB / 0.8108 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03317/4.954, allocations: 1.762 MB / 1.585 GB, free: 124.3 MB / 0.8108 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0007307/4.955, allocations: 1.058 MB / 1.586 GB, free: 123.2 MB / 0.8108 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 1.121/6.077, allocations: 153.7 MB / 1.736 GB, free: 232.7 MB / 0.811 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.541/7.617, allocations: 435.9 MB / 2.162 GB, free: 151.7 MB / 0.811 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.804/10.42, allocations: 0.8136 GB / 2.976 GB, free: 21.06 MB / 0.811 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.5527/10.97, allocations: 60.08 MB / 3.034 GB, free: 237.1 MB / 0.811 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.9912/11.97, allocations: 298.3 MB / 3.326 GB, free: 209.9 MB / 0.811 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002529/11.97, allocations: 338.5 kB / 3.326 GB, free: 209.8 MB / 0.811 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.091/12.06, allocations: 29.34 MB / 3.355 GB, free: 209.8 MB / 0.811 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001723/12.06, allocations: 1.172 kB / 3.355 GB, free: 209.8 MB / 0.811 GB
Notification: Performance of matching and sorting (n=3387): time 2.451/14.51, allocations: 424.4 MB / 3.769 GB, free: 131.1 MB / 0.811 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002255/14.51, allocations: 457.3 kB / 3.769 GB, free: 130.6 MB / 0.811 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.07776/14.59, allocations: 32.15 MB / 3.801 GB, free: 99.31 MB / 0.811 GB
Notification: Performance of collectPreVariables (initialization): time 0.01927/14.61, allocations: 0.572 MB / 3.801 GB, free: 98.73 MB / 0.811 GB
Notification: Performance of collectInitialEqns (initialization): time 0.02393/14.63, allocations: 21.74 MB / 3.823 GB, free: 82.62 MB / 0.811 GB
Notification: Performance of collectInitialBindings (initialization): time 0.03424/14.66, allocations: 12.41 MB / 3.835 GB, free: 71.84 MB / 0.811 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.07156/14.74, allocations: 9.933 MB / 3.844 GB, free: 61.89 MB / 0.811 GB
Notification: Performance of setup shared object (initialization): time 7.354e-05/14.74, allocations: 305.1 kB / 3.845 GB, free: 61.59 MB / 0.811 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.6112/15.35, allocations: 38.99 MB / 3.883 GB, free: 200.8 MB / 0.811 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.108/15.45, allocations: 53.19 MB / 3.935 GB, free: 173.8 MB / 0.811 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1916/15.65, allocations: 96.31 MB / 4.029 GB, free: 119.2 MB / 0.811 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006725/15.65, allocations: 126.3 kB / 4.029 GB, free: 119.2 MB / 0.811 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.735/17.38, allocations: 257.2 MB / 4.28 GB, free: 150.2 MB / 0.811 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0008205/17.38, allocations: 194.4 kB / 4.28 GB, free: 150.2 MB / 0.811 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0009577/17.38, allocations: 456.1 kB / 4.281 GB, free: 150.2 MB / 0.811 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1804/17.56, allocations: 73.72 MB / 4.353 GB, free: 110.8 MB / 0.811 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05342/17.62, allocations: 11.18 MB / 4.364 GB, free: 100.3 MB / 0.811 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.082/18.7, allocations: 315.1 MB / 4.671 GB, free: 122.6 MB / 0.8423 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.06673/18.77, allocations: 2.481 MB / 4.674 GB, free: 121.3 MB / 0.8423 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01953/18.79, allocations: 2.801 MB / 4.677 GB, free: 120.4 MB / 0.8423 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05963/18.85, allocations: 18.34 MB / 4.694 GB, free: 108.1 MB / 0.8423 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02264/18.87, allocations: 3.318 MB / 4.698 GB, free: 106.7 MB / 0.8423 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.283/20.15, allocations: 152.4 MB / 4.847 GB, free: 181.8 MB / 0.8423 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0004532/20.15, allocations: 363.4 kB / 4.847 GB, free: 181.8 MB / 0.8423 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0007477/20.15, allocations: 56.47 kB / 4.847 GB, free: 181.8 MB / 0.8423 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001488/20.15, allocations: 181 kB / 4.847 GB, free: 181.8 MB / 0.8423 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.9922/21.15, allocations: 238 MB / 5.079 GB, free: 32.42 MB / 0.8423 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0004237/21.15, allocations: 8.938 kB / 5.079 GB, free: 32.41 MB / 0.8423 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04149/21.19, allocations: 7.252 MB / 5.087 GB, free: 25.15 MB / 0.8423 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.5391/21.73, allocations: 39.75 MB / 5.125 GB, free: 177.4 MB / 0.8423 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01622/21.74, allocations: 1.445 MB / 5.127 GB, free: 177.4 MB / 0.8423 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.359/22.1, allocations: 159.6 MB / 5.283 GB, free: 118.1 MB / 0.8423 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.128e-05/22.1, allocations: 14.25 kB / 5.283 GB, free: 118.1 MB / 0.8423 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.347/23.45, allocations: 200.4 MB / 5.478 GB, free: 152.9 MB / 0.8423 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03533/23.49, allocations: 11.13 MB / 5.489 GB, free: 149 MB / 0.8423 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.02529/23.51, allocations: 0.9158 MB / 5.49 GB, free: 148.4 MB / 0.8423 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04625/23.56, allocations: 1.547 MB / 5.492 GB, free: 147.9 MB / 0.8423 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0321/23.59, allocations: 4.56 MB / 5.496 GB, free: 147.2 MB / 0.8423 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01221/23.6, allocations: 1.38 MB / 5.497 GB, free: 147 MB / 0.8423 GB
Notification: Performance of sorting global known variables: time 0.04688/23.65, allocations: 22.39 MB / 5.519 GB, free: 138.8 MB / 0.8423 GB
Notification: Performance of sort global known variables: time 5.81e-07/23.65, allocations: 0 / 5.519 GB, free: 138.8 MB / 0.8423 GB
Notification: Performance of remove unused functions: time 0.1016/23.75, allocations: 20.24 MB / 5.539 GB, free: 137 MB / 0.8423 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03592/23.79, allocations: 10.66 MB / 5.549 GB, free: 135.8 MB / 0.8423 GB
Notification: Performance of simCode: created initialization part: time 0.2221/24.01, allocations: 85.24 MB / 5.633 GB, free: 82.44 MB / 0.8423 GB
Notification: Performance of simCode: created event and clocks part: time 1.982e-05/24.01, allocations: 4 kB / 5.633 GB, free: 82.43 MB / 0.8423 GB
Notification: Performance of simCode: created simulation system equations: time 0.1512/24.16, allocations: 54.57 MB / 5.686 GB, free: 37.09 MB / 0.8423 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.09407/24.25, allocations: 7.838 MB / 5.694 GB, free: 30.7 MB / 0.8423 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.9075/25.16, allocations: 123.3 MB / 5.814 GB, free: 161.6 MB / 0.8423 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.09297/25.25, allocations: 30.6 MB / 5.844 GB, free: 158.2 MB / 0.8423 GB
Notification: Performance of simCode: alias equations: time 0.07602/25.33, allocations: 15.6 MB / 5.859 GB, free: 157.1 MB / 0.8423 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.03372/25.36, allocations: 4.313 MB / 5.863 GB, free: 156.8 MB / 0.8423 GB
Notification: Performance of SimCode: time 1.793e-06/25.36, allocations: 0 / 5.863 GB, free: 156.8 MB / 0.8423 GB
Notification: Performance of Templates: time 3.377/28.74, allocations: 1.012 GB / 6.875 GB, free: 170.4 MB / 0.9204 GB
"
[Timeout remaining time 631]
make -j1 -f Chemical_Chemical.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 72.16842431109399]